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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Sro2468_g328590
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Sro2468_g328590
Seminavis robusta
0.0e+00
2134.4
1183
100.0
Sro617_g176140
Seminavis robusta
0.0e+00
1926.8
1185
92.1
fso159700
Fistulifera solaris
2.5e-152
541.6
970
37.6
fso72150
Fistulifera solaris
7.9e-151
536.6
1033
36.1
ptri153740
Phaeodactylum tricornutum
5.5e-144
513.8
958
35.5
ps00G16830
Pseudo-nitzschia multiseries
8.5e-129
463.4
996
34.7
tho98120
Thalassiosira oceanica
5.8e-93
344.4
853
32.6
sya00G221400
Synedra acus
9.0e-78
293.9
766
30.8
sya00G214510
Synedra acus
9.9e-77
290.4
770
31.2
Naga_100079g10
Nannochloropsis gaditana
8.4e-60
234.2
848
26.3
Ec-07_006640
Ectocarpus siliculosus
1.6e-55
219.9
388
36.9
AT2G40770
Arabidopsis thaliana
3.7e-55
218.8
495
33.5
ENSG00000146414
Homo sapiens
3.2e-51
205.7
495
30.7
gsu117980
Galdieria sulphuraria
4.3e-48
195.3
486
31.9
Pp3c18_13500
Physcomitrella patens
4.3e-48
195.3
406
33.7
CM12G02870
Cyanidioschyzon merolae
9.0e-46
187.6
376
35.1
ccr183280
Chondrus crispus
1.9e-35
153.3
493
28.0
SPAC144.05
Schizosaccharomyces pombe
1.0e-28
131.0
319
32.9
FBgn0035689
Drosophila melanogaster
1.7e-28
130.2
383
28.7
Cre13.g603400
Chlamydomonas reinhardtii
2.9e-28
129.4
136
49.3
Cre06.g304000
Chlamydomonas reinhardtii
2.0e-24
116.7
197
36.5
SPBC23E6.02
Schizosaccharomyces pombe
3.6e-18
95.9
295
27.1
emh401240
Emiliania huxleyi
8.0e-18
94.7
238
30.7
ENSG00000071794
Homo sapiens
1.8e-17
93.6
308
24.4
ccr74920
Chondrus crispus
6.8e-17
91.7
299
27.1
emh656650
Emiliania huxleyi
1.5e-16
90.5
333
27.9
Pp3c6_21140
Physcomitrella patens
3.4e-16
89.4
258
26.0
ENSG00000116830
Homo sapiens
5.7e-16
88.6
362
23.8
emh349660
Emiliania huxleyi
1.3e-15
87.4
293
29.4
Cre14.g614400
Chlamydomonas reinhardtii
2.2e-15
86.7
208
29.8
SPBC582.10c
Schizosaccharomyces pombe
1.1e-14
84.3
311
23.2
AA0009G00720
Aureococcus anophagefferens
7.0e-14
81.6
218
30.7
Cre10.g455750
Chlamydomonas reinhardtii
7.0e-14
81.6
259
26.3
Pp3c5_4990
Physcomitrella patens
9.1e-14
81.3
293
25.9
Pp3c5_5006
Physcomitrella patens
9.1e-14
81.3
293
25.9
Pp3c18_11770
Physcomitrella patens
1.2e-13
80.9
371
25.1
SPAC17A2.12
Schizosaccharomyces pombe
1.2e-13
80.9
332
23.8
WBGene00010061
Caenorhabditis elegans
1.6e-13
80.5
342
24.6
Ec-14_005810
Ectocarpus siliculosus
1.6e-13
80.5
328
24.4
ps00G10630
Pseudo-nitzschia multiseries
2.0e-13
80.1
293
26.6
WBGene00020742
Caenorhabditis elegans
2.7e-13
79.7
334
23.7
AA0003G02210
Aureococcus anophagefferens
3.5e-13
79.3
177
31.1
AT3G20010
Arabidopsis thaliana
3.5e-13
79.3
334
24.0
CC00G22090
Cyclotella cryptica
7.7e-13
78.2
172
29.1
Sro1370_g266980
Seminavis robusta
7.7e-13
78.2
165
29.1
AT1G11100
Arabidopsis thaliana
1.0e-12
77.8
327
25.1
Sro868_g213300
Seminavis robusta
1.0e-12
77.8
315
24.4
PSNMU-V1.4_AUG-EV-PASAV3_0049980
Pseudo-nitzschia multistriata
1.3e-12
77.4
267
26.6
CM18G02590
Cyanidioschyzon merolae
1.7e-12
77.0
243
26.7
Pp3c21_12900
Physcomitrella patens
2.9e-12
76.3
283
25.1
AT1G50410
Arabidopsis thaliana
8.5e-12
74.7
336
25.6
AT5G43530
Arabidopsis thaliana
8.5e-12
74.7
256
26.2
FBgn0002542
Drosophila melanogaster
8.5e-12
74.7
205
28.8
YLR247C
Saccharomyces cerevisiae strain S288C
3.2e-11
72.8
332
23.8
YBR114W
Saccharomyces cerevisiae strain S288C
5.5e-11
72.0
171
25.1
ccr184940
Chondrus crispus
7.2e-11
71.6
261
23.8
gsu128120
Galdieria sulphuraria
9.4e-11
71.2
241
27.4
PSNMU-V1.4_AUG-EV-PASAV3_0033860
Pseudo-nitzschia multistriata
9.4e-11
71.2
200
29.0
AT3G16600
Arabidopsis thaliana
1.2e-10
70.9
175
28.0
PSNMU-V1.4_AUG-EV-PASAV3_0086750
Pseudo-nitzschia multistriata
1.2e-10
70.9
251
25.1
ps00G189740
Pseudo-nitzschia multiseries
1.2e-10
70.9
225
25.8
AA0003G05280
Aureococcus anophagefferens
2.1e-10
70.1
166
30.7
emh248570
Emiliania huxleyi
2.7e-10
69.7
185
30.3
AA0002G03300
Aureococcus anophagefferens
3.6e-10
69.3
181
34.3
tho170600
Thalassiosira oceanica
3.6e-10
69.3
169
29.6
emh296390
Emiliania huxleyi
6.1e-10
68.6
312
24.0
Cre01.g046237
Chlamydomonas reinhardtii
8.0e-10
68.2
290
24.5
SPAC13G6.01c
Schizosaccharomyces pombe
1.4e-09
67.4
352
21.9
AT1G61140
Arabidopsis thaliana
4.0e-09
65.9
334
22.2
gsu135440
Galdieria sulphuraria
5.2e-09
65.5
176
26.7
tps36440
Thalassiosira pseudonana
5.2e-09
65.5
402
22.6
ccr76240
Chondrus crispus
4.4e-08
62.4
298
27.9
fso179450
Fistulifera solaris
5.7e-08
62.0
276
26.1
AA0001G01200
Aureococcus anophagefferens
9.8e-08
61.2
107
31.8
PSNMU-V1.4_AUG-EV-PASAV3_0090180
Pseudo-nitzschia multistriata
1.3e-07
60.8
65
41.5
ps00G167010
Pseudo-nitzschia multiseries
1.3e-07
60.8
65
41.5
ccr67660
Chondrus crispus
1.7e-07
60.5
306
24.5
ptri112720
Phaeodactylum tricornutum
1.7e-07
60.5
173
28.3
tho188080
Thalassiosira oceanica
2.8e-07
59.7
292
24.7
gene18436
Fragilariopsis cylindrus
4.9e-07
58.9
65
40.0
pte230620
Paramecium tetraurelia
6.3e-07
58.5
194
24.7
fso184030
Fistulifera solaris
8.3e-07
58.2
281
25.3
ps00G19320
Pseudo-nitzschia multiseries
1.1e-06
57.8
275
26.5
tps152690
Thalassiosira pseudonana
1.4e-06
57.4
65
40.0
emh680790
Emiliania huxleyi
1.8e-06
57.0
252
26.6
Ec-23_001610
Ectocarpus siliculosus
1.8e-06
57.0
182
23.6
Ec-23_001670
Ectocarpus siliculosus
2.4e-06
56.6
182
24.2
ptri105540
Phaeodactylum tricornutum
2.4e-06
56.6
65
38.5
sya00G205480
Synedra acus
2.4e-06
56.6
65
36.9
fso141230
Fistulifera solaris
5.4e-06
55.5
65
36.9
fso173850
Fistulifera solaris
7.0e-06
55.1
65
36.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (5 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (5 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (3 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (5 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (5 genes)
Galdieria sulphuraria (3 genes)
Emiliania huxleyi (6 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (4 genes)
Synedra acus (3 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (5 genes)
Pseudo-nitzschia multistriata (4 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing