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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Sro2166_g317270
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Sro2166_g317270
Seminavis robusta
5.5e-225
781.6
404
100.0
Sro603_g173990
Seminavis robusta
1.0e-101
372.1
226
82.3
Sro336_g120260
Seminavis robusta
3.8e-101
370.2
226
81.9
Sro532_g161440
Seminavis robusta
6.4e-88
326.2
225
72.4
Sro644_g180520
Seminavis robusta
7.3e-84
312.8
219
71.2
Sro1139_g245450
Seminavis robusta
6.7e-37
156.8
213
42.7
Sro2342_g324110
Seminavis robusta
2.8e-27
124.8
173
40.5
sya00G96210
Synedra acus
4.8e-27
124.0
230
36.1
sya00G96250
Synedra acus
4.8e-27
124.0
230
36.1
sya00G109280
Synedra acus
4.8e-27
124.0
230
36.1
sya00G213030
Synedra acus
4.8e-27
124.0
230
36.1
sya00G89520
Synedra acus
1.1e-26
122.9
230
36.1
sya00G230040
Synedra acus
1.1e-26
122.9
218
34.9
sya00G171150
Synedra acus
7.7e-25
116.7
225
33.8
sya00G231320
Synedra acus
1.0e-24
116.3
240
32.5
sya00G169930
Synedra acus
6.5e-24
113.6
206
33.5
sya00G178340
Synedra acus
1.9e-23
112.1
239
31.8
sya00G236140
Synedra acus
3.2e-23
111.3
231
30.7
sya00G21530
Synedra acus
7.2e-23
110.2
231
30.7
sya00G234880
Synedra acus
3.6e-22
107.8
205
33.7
sya00G228420
Synedra acus
9.7e-20
99.8
176
35.2
sya00G07560
Synedra acus
2.8e-19
98.2
283
27.2
sya00G129480
Synedra acus
2.9e-16
88.2
182
32.4
sya00G62610
Synedra acus
3.8e-16
87.8
205
30.2
sya00G244870
Synedra acus
6.5e-16
87.0
205
29.8
sya00G154570
Synedra acus
1.9e-15
85.5
143
37.8
fso122320
Fistulifera solaris
3.6e-14
81.3
240
27.1
sya00G157380
Synedra acus
6.1e-14
80.5
237
27.4
sya00G74330
Synedra acus
1.8e-13
79.0
150
36.7
sya00G76760
Synedra acus
1.8e-13
79.0
150
36.7
sya00G79260
Synedra acus
3.9e-13
77.8
140
32.9
fso102290
Fistulifera solaris
1.5e-12
75.9
208
30.3
sya00G14570
Synedra acus
2.6e-12
75.1
173
27.7
sya00G259780
Synedra acus
7.4e-12
73.6
131
32.8
sya00G188070
Synedra acus
1.3e-11
72.8
216
22.7
CC00G79970
Cyclotella cryptica
4.8e-11
70.9
170
26.5
sya00G00730
Synedra acus
1.4e-10
69.3
138
33.3
sya00G02010
Synedra acus
1.4e-10
69.3
207
27.1
sya00G31870
Synedra acus
1.4e-10
69.3
197
28.4
sya00G72290
Synedra acus
1.4e-10
69.3
253
24.9
sya00G186520
Synedra acus
1.4e-10
69.3
218
22.5
sya00G249510
Synedra acus
1.8e-10
68.9
295
26.1
sya00G50710
Synedra acus
2.4e-10
68.6
142
33.1
sya00G167910
Synedra acus
9.1e-10
66.6
238
23.9
sya00G58240
Synedra acus
1.2e-09
66.2
151
31.8
sya00G222340
Synedra acus
2.0e-09
65.5
179
27.9
sya00G113770
Synedra acus
4.5e-09
64.3
115
37.4
sya00G88730
Synedra acus
7.7e-09
63.5
199
26.1
sya00G165310
Synedra acus
1.0e-08
63.2
213
20.7
sya00G61250
Synedra acus
1.7e-08
62.4
195
26.2
sya00G118780
Synedra acus
3.8e-08
61.2
201
25.9
CC00G171670
Cyclotella cryptica
5.0e-08
60.8
213
25.4
sya00G186360
Synedra acus
1.1e-07
59.7
194
27.8
sya00G84780
Synedra acus
1.5e-07
59.3
195
27.2
sya00G114720
Synedra acus
1.9e-07
58.9
103
31.1
sya00G214820
Synedra acus
2.5e-07
58.5
198
25.3
ps00G09640
Pseudo-nitzschia multiseries
3.2e-07
58.2
163
22.7
sya00G89880
Synedra acus
3.2e-07
58.2
194
27.3
sya00G190350
Synedra acus
3.2e-07
58.2
103
31.1
sya00G82960
Synedra acus
4.2e-07
57.8
124
27.4
CC00G199070
Cyclotella cryptica
5.5e-07
57.4
230
23.5
sya00G37690
Synedra acus
5.5e-07
57.4
110
32.7
sya00G113080
Synedra acus
3.6e-06
54.7
180
27.2
sya00G227230
Synedra acus
3.6e-06
54.7
176
25.6
CC00G117070
Cyclotella cryptica
4.7e-06
54.3
224
21.0
sya00G68930
Synedra acus
4.7e-06
54.3
190
24.7
sya00G72070
Synedra acus
4.7e-06
54.3
198
26.3
sya00G155050
Synedra acus
4.7e-06
54.3
180
25.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (7 genes)
Synedra acus (54 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing