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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c9_8350
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c9_8350
Physcomitrella patens
3.5e-234
812.0
422
100.0
Pp3c18_12020
Physcomitrella patens
5.1e-68
260.0
353
46.5
AT5G60580
Arabidopsis thaliana
1.5e-64
248.4
339
48.4
AT3G09760
Arabidopsis thaliana
4.6e-61
236.9
218
57.8
Pp3c21_17420
Physcomitrella patens
8.7e-60
232.6
344
43.3
AT5G03180
Arabidopsis thaliana
2.7e-53
211.1
208
52.4
AT3G06330
Arabidopsis thaliana
2.0e-43
178.3
236
44.9
AT5G18760
Arabidopsis thaliana
1.0e-36
156.0
205
43.4
Pp3c20_7770
Physcomitrella patens
6.4e-10
67.0
147
28.6
Pp3c24_6532
Physcomitrella patens
1.4e-09
65.9
77
32.5
Pp3c8_14550
Physcomitrella patens
2.4e-09
65.1
113
33.6
AT5G05830
Arabidopsis thaliana
3.2e-09
64.7
121
33.1
AT5G59000
Arabidopsis thaliana
7.0e-09
63.5
91
37.4
Cre02.g102600
Chlamydomonas reinhardtii
2.7e-08
61.6
66
37.9
AT2G34200
Arabidopsis thaliana
1.9e-06
55.5
74
33.8
Pp3c9_21140
Physcomitrella patens
1.9e-06
55.5
57
43.9
AT2G37950
Arabidopsis thaliana
2.5e-06
55.1
94
31.9
AT4G02075
Arabidopsis thaliana
5.6e-06
53.9
49
42.9
AT5G01070
Arabidopsis thaliana
7.3e-06
53.5
81
38.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (11 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (7 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing