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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c8_2730
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c8_2730
Physcomitrella patens
0.0e+00
1632.5
837
100.0
Pp3c3_35620
Physcomitrella patens
0.0e+00
1203.3
767
81.7
Pp3c4_5240
Physcomitrella patens
0.0e+00
1197.6
858
73.8
Pp3c12_11280
Physcomitrella patens
6.8e-282
971.5
694
74.5
AT3G45190
Arabidopsis thaliana
2.7e-206
720.3
838
47.5
AT2G28360
Arabidopsis thaliana
5.9e-201
702.6
841
47.9
AT1G30470
Arabidopsis thaliana
1.8e-197
691.0
611
57.8
AT1G07990
Arabidopsis thaliana
9.8e-196
685.3
860
46.9
Cre12.g484150
Chlamydomonas reinhardtii
3.6e-105
384.4
553
38.9
ENSG00000110075
Homo sapiens
8.6e-59
230.3
602
26.9
ENSG00000100239
Homo sapiens
2.2e-54
215.7
713
27.6
ENSG00000105063
Homo sapiens
1.2e-52
209.9
660
26.8
FBgn0035688
Drosophila melanogaster
5.4e-29
131.3
445
22.9
SPCC663.01c
Schizosaccharomyces pombe
1.0e-27
127.1
382
27.0
Ec-21_006010
Ectocarpus siliculosus
5.3e-24
114.8
503
22.3
Naga_100019g23
Nannochloropsis gaditana
6.9e-24
114.4
172
37.2
gsu37230
Galdieria sulphuraria
3.0e-19
99.0
630
24.3
emh377550
Emiliania huxleyi
5.1e-19
98.2
134
35.1
emh367200
Emiliania huxleyi
5.1e-19
98.2
134
35.1
pte635130
Paramecium tetraurelia
6.7e-19
97.8
538
22.7
pte297140
Paramecium tetraurelia
8.7e-19
97.4
528
21.2
pte74460
Paramecium tetraurelia
3.3e-18
95.5
547
21.8
fso12720
Fistulifera solaris
5.6e-18
94.7
552
23.2
fso75350
Fistulifera solaris
1.1e-16
90.5
552
23.0
sya00G114840
Synedra acus
1.3e-14
83.6
490
21.4
pte311640
Paramecium tetraurelia
1.1e-13
80.5
554
21.7
pte184080
Paramecium tetraurelia
3.5e-12
75.5
486
22.2
pte681360
Paramecium tetraurelia
3.9e-11
72.0
592
21.6
pte285270
Paramecium tetraurelia
5.1e-11
71.6
506
20.4
gsu85730
Galdieria sulphuraria
6.7e-11
71.2
450
21.8
pte676990
Paramecium tetraurelia
8.7e-11
70.9
548
22.3
WBGene00008166
Caenorhabditis elegans
1.9e-10
69.7
231
26.0
gsu46000
Galdieria sulphuraria
1.6e-09
66.6
426
22.1
ccr25880
Chondrus crispus
5.3e-08
61.6
435
21.1
PSNMU-V1.4_AUG-EV-PASAV3_0087000
Pseudo-nitzschia multistriata
7.6e-07
57.8
64
40.6
PSNMU-V1.4_AUG-EV-PASAV3_0010310
Pseudo-nitzschia multistriata
7.6e-07
57.8
64
40.6
ps00G141370
Pseudo-nitzschia multiseries
2.9e-06
55.8
64
39.1
Sro486_g152600
Seminavis robusta
3.8e-06
55.5
66
34.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (3 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (4 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (3 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (8 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing