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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c5_10370
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c5_10370
Physcomitrella patens
0.0e+00
1103.2
999
100.0
Pp3c6_13940
Physcomitrella patens
9.0e-281
968.0
991
91.8
AT3G04240
Arabidopsis thaliana
1.5e-222
774.6
475
76.8
Ec-10_004480
Ectocarpus siliculosus
2.7e-136
488.0
465
53.5
ccr63500
Chondrus crispus
3.2e-121
438.0
442
50.9
AA0009G02690
Aureococcus anophagefferens
4.0e-119
431.0
483
48.4
FBgn0261403
Drosophila melanogaster
1.4e-108
396.0
558
39.1
ENSG00000147162
Homo sapiens
1.6e-107
392.5
566
38.9
gsu112630
Galdieria sulphuraria
5.0e-106
387.5
438
46.6
WBGene00003858
Caenorhabditis elegans
1.6e-104
382.5
560
38.0
AA0047G00150
Aureococcus anophagefferens
4.2e-76
288.1
470
37.7
AA0024G00770
Aureococcus anophagefferens
4.3e-73
278.1
460
38.3
emh497330
Emiliania huxleyi
4.9e-69
264.6
459
34.6
Sro96_g049760
Seminavis robusta
4.2e-68
261.5
478
35.1
emh350480
Emiliania huxleyi
5.6e-65
251.1
459
33.6
Ec-26_002990
Ectocarpus siliculosus
2.4e-63
245.7
455
33.8
ps00G21300
Pseudo-nitzschia multiseries
2.9e-53
212.2
456
33.6
tps37460
Thalassiosira pseudonana
4.9e-53
211.5
404
34.9
sya00G56000
Synedra acus
1.1e-52
210.3
400
31.0
tho96860
Thalassiosira oceanica
1.1e-52
210.3
515
31.7
Ec-01_007580
Ectocarpus siliculosus
3.9e-50
201.8
408
36.0
CC00G89770
Cyclotella cryptica
6.7e-50
201.1
442
32.1
tps28830
Thalassiosira pseudonana
2.9e-45
185.7
416
29.8
CC00G00960
Cyclotella cryptica
2.5e-44
182.6
434
30.6
sya00G136730
Synedra acus
3.2e-44
182.2
506
27.3
PSNMU-V1.4_AUG-EV-PASAV3_0107510
Pseudo-nitzschia multistriata
5.5e-44
181.4
508
27.2
Sro721_g192790
Seminavis robusta
3.5e-43
178.7
505
27.3
ps00G03410
Pseudo-nitzschia multiseries
2.8e-40
169.1
510
26.7
ptri191080
Phaeodactylum tricornutum
6.3e-40
167.9
508
27.6
gsu45720
Galdieria sulphuraria
1.5e-38
163.3
375
31.7
AA0012G01010
Aureococcus anophagefferens
1.1e-36
157.1
389
30.8
Pp3c2_30810
Physcomitrella patens
9.4e-36
154.1
377
27.1
Pp3c1_2460
Physcomitrella patens
2.7e-35
152.5
377
27.9
Pp3c1_2450
Physcomitrella patens
2.7e-35
152.5
377
27.9
tho530960
Thalassiosira oceanica
6.1e-35
151.4
308
33.1
gene12104
Fragilariopsis cylindrus
2.3e-34
149.4
389
28.3
AT3G11540
Arabidopsis thaliana
3.0e-34
149.1
377
27.9
emh408300
Emiliania huxleyi
4.5e-30
135.2
478
27.0
emh148240
Emiliania huxleyi
4.5e-30
135.2
478
27.0
Cre12.g552851
Chlamydomonas reinhardtii
1.4e-26
123.6
308
28.2
fso51740
Fistulifera solaris
3.5e-22
109.0
240
27.9
fso06500
Fistulifera solaris
5.0e-21
105.1
240
27.1
AA0013G01360
Aureococcus anophagefferens
4.2e-20
102.1
399
26.1
Ec-20_004160
Ectocarpus siliculosus
4.7e-19
98.6
141
41.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (5 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (4 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (2 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
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