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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c3_5910
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c3_5910
Physcomitrella patens
0.0e+00
1216.1
618
100.0
Pp3c13_3950
Physcomitrella patens
8.4e-261
901.0
640
74.2
Pp3c25_11880
Physcomitrella patens
3.3e-156
553.5
672
51.6
Pp3c16_22960
Physcomitrella patens
9.3e-143
508.8
675
48.1
AT2G15560
Arabidopsis thaliana
2.1e-78
295.0
548
38.0
AT3G62210
Arabidopsis thaliana
3.1e-29
131.7
185
40.0
AT3G62200
Arabidopsis thaliana
9.0e-29
130.2
192
40.1
AT5G61190
Arabidopsis thaliana
1.7e-24
115.9
149
43.0
AT5G61180
Arabidopsis thaliana
7.3e-23
110.5
168
36.9
AT5G09840
Arabidopsis thaliana
1.3e-19
99.8
165
29.7
AT5G64710
Arabidopsis thaliana
2.4e-18
95.5
165
30.9
Sro1942_g306730
Seminavis robusta
1.8e-16
89.4
131
35.9
Sro951_g223980
Seminavis robusta
1.8e-16
89.4
131
35.9
AT3G60940
Arabidopsis thaliana
5.1e-16
87.8
157
33.8
tho354420
Thalassiosira oceanica
1.9e-15
85.9
135
37.8
Pp3c1_4990
Physcomitrella patens
4.8e-14
81.3
159
32.1
AT3G61028
Arabidopsis thaliana
1.5e-12
76.3
114
31.6
AA0073G00100
Aureococcus anophagefferens
4.5e-12
74.7
157
33.1
gsu142030
Galdieria sulphuraria
4.9e-11
71.2
143
32.2
gsu142050
Galdieria sulphuraria
4.9e-11
71.2
143
32.2
Sro55_g032370
Seminavis robusta
7.1e-10
67.4
131
32.8
AT3G62050
Arabidopsis thaliana
5.1e-08
61.2
103
35.0
Sro384_g131430
Seminavis robusta
9.6e-07
57.0
167
28.1
Sro384_g131410
Seminavis robusta
9.6e-07
57.0
167
28.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (10 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (5 genes)
Synedra acus (0 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing