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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c2_15860
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c2_15860
Physcomitrella patens
0.0e+00
1732.2
863
100.0
Pp3c1_24850
Physcomitrella patens
0.0e+00
1525.4
868
88.1
AT1G53090
Arabidopsis thaliana
2.1e-185
651.0
824
43.3
AT4G11110
Arabidopsis thaliana
3.7e-182
640.2
856
41.4
AT3G15354
Arabidopsis thaliana
5.4e-181
636.3
855
42.2
AT2G46340
Arabidopsis thaliana
5.4e-173
609.8
846
42.2
Pp3c11_15840
Physcomitrella patens
7.9e-108
393.3
568
40.5
Pp3c7_14320
Physcomitrella patens
1.1e-106
389.4
557
40.4
Pp3c3_16700
Physcomitrella patens
6.9e-104
380.2
566
39.2
Pp3c2_24290
Physcomitrella patens
2.0e-103
378.6
570
38.4
Pp3c6_5030
Physcomitrella patens
2.0e-103
378.6
567
39.0
Pp3c5_26150
Physcomitrella patens
7.7e-103
376.7
568
38.9
Pp3c16_19410
Physcomitrella patens
7.2e-101
370.2
570
38.9
AT2G32950
Arabidopsis thaliana
2.7e-100
368.2
555
38.2
Pp3c1_13190
Physcomitrella patens
1.8e-99
365.5
614
37.1
ccr87860
Chondrus crispus
4.8e-97
357.5
561
38.5
Pp3c13_21340
Physcomitrella patens
2.4e-96
355.1
614
36.8
ENSG00000143207
Homo sapiens
4.2e-93
344.4
549
37.5
gsu47420
Galdieria sulphuraria
1.3e-89
332.8
317
49.8
Cre13.g602700
Chlamydomonas reinhardtii
6.3e-89
330.5
400
44.2
CM11G00380
Cyanidioschyzon merolae
3.1e-80
301.6
376
42.8
ccr159940
Chondrus crispus
1.1e-69
266.5
332
42.5
Cre02.g085050
Chlamydomonas reinhardtii
2.1e-52
209.1
371
35.3
AT5G23730
Arabidopsis thaliana
3.2e-40
168.7
334
34.4
AT5G52250
Arabidopsis thaliana
9.2e-40
167.2
326
34.7
Cre01.g053850
Chlamydomonas reinhardtii
4.2e-24
115.2
278
29.5
Pp3c2_29420
Physcomitrella patens
5.4e-24
114.8
451
24.4
Pp3c1_3260
Physcomitrella patens
2.1e-20
102.8
400
24.0
pte530450
Paramecium tetraurelia
5.6e-13
78.2
201
29.4
AT2G47990
Arabidopsis thaliana
1.1e-11
73.9
222
27.0
Cre06.g255400
Chlamydomonas reinhardtii
1.1e-11
73.9
190
30.0
ENSG00000071127
Homo sapiens
1.5e-10
70.1
202
29.2
pte449650
Paramecium tetraurelia
4.5e-10
68.6
285
23.9
Sro26_g017620
Seminavis robusta
5.8e-10
68.2
253
24.9
fso134890
Fistulifera solaris
7.6e-10
67.8
146
34.9
ENSG00000086232
Homo sapiens
3.8e-09
65.5
108
35.2
emh659730
Emiliania huxleyi
6.4e-09
64.7
90
34.4
ps00G159590
Pseudo-nitzschia multiseries
1.1e-08
63.9
144
32.6
sya00G50210
Synedra acus
1.1e-08
63.9
90
32.2
AA0015G01510
Aureococcus anophagefferens
1.4e-08
63.5
183
26.2
gene2763
Fragilariopsis cylindrus
3.2e-08
62.4
213
23.9
gene3334
Fragilariopsis cylindrus
1.2e-07
60.5
212
24.1
pte672670
Paramecium tetraurelia
1.2e-07
60.5
192
22.4
Sro524_g160010
Seminavis robusta
1.2e-07
60.5
104
34.6
Cre06.g278176
Chlamydomonas reinhardtii
1.6e-07
60.1
163
29.4
pte687680
Paramecium tetraurelia
1.6e-07
60.1
105
31.4
sya00G193460
Synedra acus
1.6e-07
60.1
303
22.1
FBgn0027518
Drosophila melanogaster
4.6e-07
58.5
81
38.3
AT5G08560
Arabidopsis thaliana
6.0e-07
58.2
158
25.9
Ec-17_002790
Ectocarpus siliculosus
6.0e-07
58.2
181
27.1
SPAC17D4.01
Schizosaccharomyces pombe
6.0e-07
58.2
151
27.2
gsu23080
Galdieria sulphuraria
7.9e-07
57.8
215
25.1
FBgn0023527
Drosophila melanogaster
1.0e-06
57.4
144
27.1
sya00G188900
Synedra acus
1.0e-06
57.4
146
29.5
sya00G202300
Synedra acus
2.3e-06
56.2
130
29.2
tho296180
Thalassiosira oceanica
2.3e-06
56.2
147
30.6
PSNMU-V1.4_AUG-EV-PASAV3_0038170
Pseudo-nitzschia multistriata
3.0e-06
55.8
146
30.8
PSNMU-V1.4_AUG-EV-PASAV3_0046940
Pseudo-nitzschia multistriata
3.0e-06
55.8
208
24.0
Cre16.g655400
Chlamydomonas reinhardtii
3.9e-06
55.5
115
29.6
ENSG00000172071
Homo sapiens
3.9e-06
55.5
82
35.4
SPAC23C4.02
Schizosaccharomyces pombe
3.9e-06
55.5
169
29.0
Ec-04_003080
Ectocarpus siliculosus
6.7e-06
54.7
151
29.1
emh675180
Emiliania huxleyi
8.7e-06
54.3
100
33.0
emh202510
Emiliania huxleyi
8.7e-06
54.3
100
33.0
SPAC222.07c
Schizosaccharomyces pombe
8.7e-06
54.3
133
28.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (1 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (4 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (9 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (4 genes)
Seminavis robusta (2 genes)
Synedra acus (4 genes)
Physcomitrella patens (13 genes)
Chlamydomonas reinhardtii (6 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing