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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c25_5880
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c25_5880
Physcomitrella patens
0.0e+00
1084.7
551
100.0
Pp3c6_15520
Physcomitrella patens
3.9e-188
659.4
550
63.5
Pp3c5_15450
Physcomitrella patens
8.7e-188
658.3
559
64.4
AT1G19650
Arabidopsis thaliana
8.6e-111
402.5
557
43.6
AT4G36490
Arabidopsis thaliana
4.0e-108
393.7
534
42.5
AT4G39170
Arabidopsis thaliana
1.5e-107
391.7
573
41.0
AT4G34580
Arabidopsis thaliana
2.6e-107
391.0
548
40.9
AT1G75370
Arabidopsis thaliana
3.4e-107
390.6
374
53.2
AT4G39180
Arabidopsis thaliana
2.2e-106
387.9
546
41.6
AT2G21540
Arabidopsis thaliana
3.8e-106
387.1
549
42.6
AT2G18180
Arabidopsis thaliana
1.7e-103
378.3
521
42.6
AT2G21520
Arabidopsis thaliana
1.7e-103
378.3
408
48.5
Pp3c3_20900
Physcomitrella patens
1.1e-102
375.6
299
58.9
AT3G24840
Arabidopsis thaliana
1.9e-102
374.8
308
55.5
AT2G16380
Arabidopsis thaliana
6.2e-101
369.8
520
42.1
AT1G55690
Arabidopsis thaliana
1.6e-96
355.1
346
52.0
AT5G56160
Arabidopsis thaliana
1.6e-93
345.1
344
52.0
AT5G47510
Arabidopsis thaliana
1.6e-77
292.0
293
46.8
Pp3c15_10500
Physcomitrella patens
5.1e-63
243.8
249
48.2
Pp3c9_9050
Physcomitrella patens
5.7e-62
240.4
285
44.2
Cre12.g527050
Chlamydomonas reinhardtii
3.0e-55
218.0
257
42.4
Cre02.g147800
Chlamydomonas reinhardtii
5.7e-54
213.8
268
37.3
SPAC3H8.10
Schizosaccharomyces pombe
2.2e-50
201.8
256
40.2
YMR079W
Saccharomyces cerevisiae strain S288C
5.0e-50
200.7
261
39.8
pte379200
Paramecium tetraurelia
6.5e-50
200.3
240
42.5
pte183060
Paramecium tetraurelia
1.4e-49
199.1
324
34.9
pte357550
Paramecium tetraurelia
1.9e-49
198.7
323
35.9
Cre17.g703200
Chlamydomonas reinhardtii
9.4e-49
196.4
261
38.3
Cre02.g141950
Chlamydomonas reinhardtii
6.3e-45
183.7
321
33.6
Cre10.g444250
Chlamydomonas reinhardtii
2.4e-44
181.8
243
37.4
Cre17.g718100
Chlamydomonas reinhardtii
1.2e-43
179.5
234
39.3
YKL091C
Saccharomyces cerevisiae strain S288C
6.7e-39
163.7
265
34.3
ENSG00000129657
Homo sapiens
5.4e-28
127.5
223
33.6
ENSG00000103184
Homo sapiens
4.5e-27
124.4
223
32.7
WBGene00011962
Caenorhabditis elegans
3.8e-26
121.3
229
30.6
ENSG00000100012
Homo sapiens
1.1e-25
119.8
241
31.1
ENSG00000100003
Homo sapiens
5.5e-25
117.5
238
31.9
Pp3c15_22280
Physcomitrella patens
2.8e-24
115.2
226
33.2
ENSG00000133488
Homo sapiens
3.0e-23
111.7
238
29.4
tho26760
Thalassiosira oceanica
9.8e-22
106.7
219
31.1
Sro273_g105100
Seminavis robusta
1.3e-21
106.3
240
31.7
ptri128010
Phaeodactylum tricornutum
2.2e-21
105.5
230
28.3
tps115840
Thalassiosira pseudonana
2.4e-20
102.1
217
30.4
ENSG00000214491
Homo sapiens
3.2e-20
101.7
236
27.5
fso139450
Fistulifera solaris
4.1e-20
101.3
243
29.2
sya00G43820
Synedra acus
4.1e-20
101.3
220
31.8
CC00G115600
Cyclotella cryptica
7.0e-20
100.5
218
30.7
CC00G120950
Cyclotella cryptica
7.0e-20
100.5
218
30.7
fso195560
Fistulifera solaris
9.2e-20
100.1
240
30.0
sya00G141120
Synedra acus
1.2e-19
99.8
252
27.4
Ec-08_005340
Ectocarpus siliculosus
3.5e-19
98.2
218
28.9
AT5G47730
Arabidopsis thaliana
4.5e-19
97.8
244
31.1
ptri213690
Phaeodactylum tricornutum
1.3e-18
96.3
218
32.1
ptri242570
Phaeodactylum tricornutum
1.3e-18
96.3
237
28.3
Pp3c9_21440
Physcomitrella patens
2.9e-18
95.1
210
31.9
AT1G55840
Arabidopsis thaliana
3.9e-18
94.7
255
31.0
Ec-12_005330
Ectocarpus siliculosus
3.9e-18
94.7
232
27.2
fso196290
Fistulifera solaris
2.5e-17
92.0
221
29.9
fso42020
Fistulifera solaris
3.3e-17
91.7
221
29.9
ptri137950
Phaeodactylum tricornutum
3.3e-17
91.7
226
27.0
Ec-27_003350
Ectocarpus siliculosus
1.2e-16
89.7
217
28.1
Sro686_g187050
Seminavis robusta
1.2e-16
89.7
263
25.9
FBgn0035146
Drosophila melanogaster
2.1e-16
89.0
250
26.0
emh763770
Emiliania huxleyi
3.6e-16
88.2
224
28.6
emh176400
Emiliania huxleyi
3.6e-16
88.2
239
28.5
gene8260
Fragilariopsis cylindrus
3.6e-16
88.2
234
26.5
ps00G26530
Pseudo-nitzschia multiseries
8.0e-16
87.0
224
26.8
tps11020
Thalassiosira pseudonana
8.0e-16
87.0
216
25.0
Sro171_g075720
Seminavis robusta
1.0e-15
86.7
217
28.6
Ec-19_001910
Ectocarpus siliculosus
1.8e-15
85.9
202
29.2
AA0023G00270
Aureococcus anophagefferens
2.3e-15
85.5
211
24.6
CC00G49550
Cyclotella cryptica
2.3e-15
85.5
215
26.5
WBGene00009241
Caenorhabditis elegans
3.1e-15
85.1
254
25.6
sya00G234370
Synedra acus
4.0e-15
84.7
237
27.8
sya00G186110
Synedra acus
5.2e-15
84.3
212
26.4
Naga_100001g140
Nannochloropsis gaditana
6.8e-15
84.0
207
27.5
sya00G189390
Synedra acus
3.4e-14
81.6
212
25.9
emh76920
Emiliania huxleyi
4.4e-14
81.3
214
28.0
Pp3c11_20220
Physcomitrella patens
4.4e-14
81.3
239
29.3
Sro926_g220970
Seminavis robusta
7.5e-14
80.5
305
25.6
emh483630
Emiliania huxleyi
9.8e-14
80.1
239
27.2
AA0001G01590
Aureococcus anophagefferens
1.3e-13
79.7
212
28.8
Naga_100003g22
Nannochloropsis gaditana
1.7e-13
79.3
221
29.4
AT1G72160
Arabidopsis thaliana
2.2e-13
79.0
313
23.6
emh523700
Emiliania huxleyi
2.9e-13
78.6
178
29.8
emh402160
Emiliania huxleyi
3.7e-13
78.2
161
28.0
fso24430
Fistulifera solaris
6.4e-13
77.4
222
25.2
AT1G01630
Arabidopsis thaliana
8.3e-13
77.0
245
27.8
fso115100
Fistulifera solaris
1.1e-12
76.6
222
25.2
Sro1272_g258250
Seminavis robusta
1.1e-12
76.6
168
29.2
pte104510
Paramecium tetraurelia
3.2e-12
75.1
228
27.2
Pp3c7_7820
Physcomitrella patens
5.4e-12
74.3
238
26.9
Sro3224_g345570
Seminavis robusta
9.2e-12
73.6
227
22.9
Sro1207_g252530
Seminavis robusta
9.2e-12
73.6
227
22.9
pte233780
Paramecium tetraurelia
1.2e-11
73.2
243
25.5
Sro842_g209670
Seminavis robusta
1.6e-11
72.8
255
25.1
CM20G06080
Cyanidioschyzon merolae
3.5e-11
71.6
259
25.9
Sro2071_g313400
Seminavis robusta
4.6e-11
71.2
260
24.6
PSNMU-V1.4_AUG-EV-PASAV3_0012980
Pseudo-nitzschia multistriata
6.0e-11
70.9
259
25.1
Sro1071_g237880
Seminavis robusta
6.0e-11
70.9
209
26.3
Sro2540_g330650
Seminavis robusta
7.8e-11
70.5
259
24.7
emh773480
Emiliania huxleyi
1.3e-10
69.7
171
28.1
pte147590
Paramecium tetraurelia
1.7e-10
69.3
243
25.1
Sro427_g140720
Seminavis robusta
1.7e-10
69.3
232
24.1
Sro319_g116130
Seminavis robusta
3.9e-10
68.2
253
25.3
Sro737_g195150
Seminavis robusta
3.9e-10
68.2
229
25.8
Sro1504_g278070
Seminavis robusta
5.0e-10
67.8
272
23.2
tho178640
Thalassiosira oceanica
5.0e-10
67.8
266
25.6
AT3G51670
Arabidopsis thaliana
8.6e-10
67.0
287
25.1
Cre03.g210961
Chlamydomonas reinhardtii
8.6e-10
67.0
304
23.7
Cre12.g503950
Chlamydomonas reinhardtii
8.6e-10
67.0
229
25.8
Cre12.g522100
Chlamydomonas reinhardtii
8.6e-10
67.0
254
26.8
Pp3c12_23960
Physcomitrella patens
8.6e-10
67.0
84
39.3
Sro1058_g236350
Seminavis robusta
8.6e-10
67.0
303
22.4
gsu49100
Galdieria sulphuraria
1.5e-09
66.2
238
26.1
Naga_100003g2
Nannochloropsis gaditana
1.5e-09
66.2
248
26.2
Pp3c27_4100
Physcomitrella patens
1.5e-09
66.2
254
27.6
SPAC3H8.02
Schizosaccharomyces pombe
1.5e-09
66.2
221
28.1
Sro1567_g282930
Seminavis robusta
1.5e-09
66.2
229
24.0
Ec-18_002930
Ectocarpus siliculosus
1.9e-09
65.9
213
24.9
tps178190
Thalassiosira pseudonana
1.9e-09
65.9
194
25.8
emh731210
Emiliania huxleyi
4.3e-09
64.7
219
26.5
sya00G199200
Synedra acus
5.6e-09
64.3
119
30.3
Sro414_g138340
Seminavis robusta
7.3e-09
63.9
194
25.8
Sro1116_g242900
Seminavis robusta
1.2e-08
63.2
207
29.0
Ec-02_003360
Ectocarpus siliculosus
1.6e-08
62.8
97
33.0
AT4G08690
Arabidopsis thaliana
2.1e-08
62.4
220
25.5
pte38000
Paramecium tetraurelia
2.1e-08
62.4
211
26.1
gsu28510
Galdieria sulphuraria
2.8e-08
62.0
243
25.1
Sro160_g072190
Seminavis robusta
2.8e-08
62.0
209
24.4
Sro109_g054580
Seminavis robusta
3.6e-08
61.6
357
21.6
tps62880
Thalassiosira pseudonana
4.7e-08
61.2
252
25.0
emh441820
Emiliania huxleyi
8.0e-08
60.5
202
22.3
Pp3c3_26700
Physcomitrella patens
8.0e-08
60.5
241
24.5
Pp3c25_7490
Physcomitrella patens
1.1e-07
60.1
209
27.8
pte721660
Paramecium tetraurelia
1.4e-07
59.7
248
24.2
Sro234_g094540
Seminavis robusta
1.4e-07
59.7
256
21.9
Sro652_g181670
Seminavis robusta
1.8e-07
59.3
261
19.9
Naga_100058g27
Nannochloropsis gaditana
2.3e-07
58.9
93
33.3
emh303680
Emiliania huxleyi
3.1e-07
58.5
112
30.4
Sro23_g015690
Seminavis robusta
4.0e-07
58.2
281
21.4
ps00G29050
Pseudo-nitzschia multiseries
5.2e-07
57.8
236
25.4
ps00G131830
Pseudo-nitzschia multiseries
5.2e-07
57.8
238
26.9
emh483830
Emiliania huxleyi
8.9e-07
57.0
330
21.2
Sro414_g138400
Seminavis robusta
8.9e-07
57.0
294
21.1
gene11290
Fragilariopsis cylindrus
1.2e-06
56.6
163
23.3
sya00G93900
Synedra acus
1.2e-06
56.6
234
24.4
AT1G22180
Arabidopsis thaliana
1.5e-06
56.2
218
25.2
emh670640
Emiliania huxleyi
2.0e-06
55.8
188
26.1
Cre02.g101200
Chlamydomonas reinhardtii
2.6e-06
55.5
213
22.1
emh623380
Emiliania huxleyi
2.6e-06
55.5
186
21.0
gene13654
Fragilariopsis cylindrus
3.4e-06
55.1
261
23.0
ENSG00000249590
Homo sapiens
3.4e-06
55.1
64
40.6
Ec-10_005630
Ectocarpus siliculosus
5.8e-06
54.3
248
24.2
emh204930
Emiliania huxleyi
7.5e-06
53.9
185
21.6
Pp3c13_20180
Physcomitrella patens
9.8e-06
53.5
297
23.6
Sro330_g118890
Seminavis robusta
9.8e-06
53.5
259
22.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (4 genes)
Thalassiosira pseudonana (4 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (7 genes)
Nannochloropsis gaditana (4 genes)
Homo sapiens (7 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (21 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (14 genes)
Paramecium tetraurelia (8 genes)
Seminavis robusta (26 genes)
Synedra acus (7 genes)
Physcomitrella patens (15 genes)
Chlamydomonas reinhardtii (10 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing