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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c1_22640
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c1_22640
Physcomitrella patens
0.0e+00
1662.9
824
100.0
AT5G22470
Arabidopsis thaliana
1.3e-200
701.4
776
45.0
AT2G31320
Arabidopsis thaliana
5.2e-101
370.5
780
31.2
Pp3c8_17220
Physcomitrella patens
5.8e-100
367.1
792
30.6
ENSG00000143799
Homo sapiens
4.2e-66
254.6
797
27.7
FBgn0010247
Drosophila melanogaster
2.4e-45
185.7
816
23.5
AT4G02390
Arabidopsis thaliana
1.5e-39
166.4
491
25.1
Pp3c22_13240
Physcomitrella patens
1.8e-37
159.5
495
24.8
ENSG00000129484
Homo sapiens
3.5e-36
155.2
539
26.5
pte591900
Paramecium tetraurelia
1.6e-33
146.4
490
26.1
Sro1616_g286270
Seminavis robusta
3.7e-30
135.2
511
24.1
WBGene00004049
Caenorhabditis elegans
1.8e-29
132.9
494
26.3
pte427070
Paramecium tetraurelia
2.5e-26
122.5
358
25.4
pte68730
Paramecium tetraurelia
1.8e-24
116.3
488
21.3
emh410120
Emiliania huxleyi
2.0e-23
112.8
512
25.4
pte139850
Paramecium tetraurelia
2.6e-23
112.5
535
23.6
emh105980
Emiliania huxleyi
7.5e-23
110.9
502
24.1
emh663610
Emiliania huxleyi
1.3e-22
110.2
365
25.2
pte237100
Paramecium tetraurelia
8.3e-22
107.5
357
23.8
emh53760
Emiliania huxleyi
3.6e-17
92.0
160
36.2
Sro1047_g235110
Seminavis robusta
6.1e-17
91.3
625
23.8
Sro1169_g248640
Seminavis robusta
1.7e-14
83.2
552
21.2
Ec-17_003060
Ectocarpus siliculosus
3.5e-12
75.5
448
22.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (4 genes)
Paramecium tetraurelia (5 genes)
Seminavis robusta (3 genes)
Synedra acus (0 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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