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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c12_15190
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c12_15190
Physcomitrella patens
1.1e-212
740.3
356
100.0
Pp3c4_20430
Physcomitrella patens
2.8e-120
433.3
367
60.5
Pp3c3_12890
Physcomitrella patens
7.3e-116
418.7
394
57.6
Pp3c13_20650
Physcomitrella patens
5.4e-111
402.5
388
56.4
Pp3c7_6590
Physcomitrella patens
1.1e-90
335.1
227
75.3
Pp3c2_32530
Physcomitrella patens
3.4e-73
276.9
140
93.6
Pp3c13_6470
Physcomitrella patens
6.7e-61
236.1
278
50.0
Pp3c26_13950
Physcomitrella patens
2.5e-60
234.2
192
60.9
Pp3c3_2470
Physcomitrella patens
8.2e-59
229.2
224
55.4
AT1G12260
Arabidopsis thaliana
4.9e-56
219.9
199
55.3
AT2G18060
Arabidopsis thaliana
4.9e-56
219.9
234
48.7
Pp3c6_1310
Physcomitrella patens
4.9e-56
219.9
201
55.7
AT4G36160
Arabidopsis thaliana
6.5e-56
219.5
155
64.5
AT5G66300
Arabidopsis thaliana
2.5e-55
217.6
166
60.2
AT1G62700
Arabidopsis thaliana
7.1e-55
216.1
156
63.5
AT3G61910
Arabidopsis thaliana
2.3e-53
211.1
179
59.8
AT5G62380
Arabidopsis thaliana
2.3e-53
211.1
160
59.4
AT2G46770
Arabidopsis thaliana
5.1e-53
209.9
175
60.0
AT1G79580
Arabidopsis thaliana
1.1e-52
208.8
158
64.6
AT1G32770
Arabidopsis thaliana
9.7e-52
205.7
168
60.7
AT1G71930
Arabidopsis thaliana
1.6e-51
204.9
172
55.2
AT1G33280
Arabidopsis thaliana
4.8e-51
203.4
159
61.0
AT4G10350
Arabidopsis thaliana
2.4e-50
201.1
162
60.5
Pp3c4_11490
Physcomitrella patens
4.3e-44
180.3
194
49.0
AT1G54330
Arabidopsis thaliana
5.7e-44
179.9
161
50.3
Pp3c3_25610
Physcomitrella patens
1.3e-43
178.7
196
48.5
AT3G17730
Arabidopsis thaliana
3.7e-43
177.2
171
48.0
AT1G65910
Arabidopsis thaliana
4.1e-42
173.7
164
48.8
Pp3c13_10800
Physcomitrella patens
5.3e-42
173.3
200
44.0
AT2G24430
Arabidopsis thaliana
6.9e-42
172.9
158
51.3
AT5G17260
Arabidopsis thaliana
6.9e-42
172.9
163
49.1
Pp3c12_18020
Physcomitrella patens
6.9e-42
172.9
163
54.0
AT3G03200
Arabidopsis thaliana
9.1e-42
172.6
163
49.7
Pp3c3_8880
Physcomitrella patens
9.1e-42
172.6
243
39.1
AT1G26870
Arabidopsis thaliana
1.2e-41
172.2
191
44.0
Pp3c26_4660
Physcomitrella patens
1.2e-41
172.2
163
51.5
AT1G61110
Arabidopsis thaliana
2.6e-41
171.0
181
45.3
AT4G17980
Arabidopsis thaliana
2.6e-41
171.0
161
48.4
Pp3c27_7510
Physcomitrella patens
3.4e-41
170.6
201
44.3
Pp3c16_19830
Physcomitrella patens
4.5e-41
170.2
165
50.9
AT1G69490
Arabidopsis thaliana
5.9e-41
169.9
280
36.1
Pp3c27_7560
Physcomitrella patens
5.9e-41
169.9
164
48.2
Pp3c6_27690
Physcomitrella patens
1.0e-40
169.1
166
49.4
AT1G76420
Arabidopsis thaliana
1.7e-40
168.3
156
51.3
Pp3c6_28230
Physcomitrella patens
1.7e-40
168.3
210
40.0
AT3G18400
Arabidopsis thaliana
2.9e-40
167.5
203
43.3
Pp3c5_740
Physcomitrella patens
3.8e-40
167.2
211
41.2
Pp3c5_630
Physcomitrella patens
5.0e-40
166.8
202
41.6
Pp3c24_8270
Physcomitrella patens
1.1e-39
165.6
167
46.7
AT3G15510
Arabidopsis thaliana
3.2e-39
164.1
171
44.4
AT5G61430
Arabidopsis thaliana
5.5e-39
163.3
160
50.6
AT1G56010
Arabidopsis thaliana
7.2e-39
162.9
194
45.4
AT5G39610
Arabidopsis thaliana
7.2e-39
162.9
213
43.2
AT5G46590
Arabidopsis thaliana
7.2e-39
162.9
160
48.1
Pp3c8_6080
Physcomitrella patens
1.6e-38
161.8
167
44.9
Pp3c16_13150
Physcomitrella patens
2.7e-38
161.0
199
40.7
AT2G43000
Arabidopsis thaliana
3.6e-38
160.6
247
36.0
AT3G04060
Arabidopsis thaliana
6.1e-38
159.8
160
50.6
AT5G07680
Arabidopsis thaliana
7.9e-38
159.5
191
45.5
AT5G39820
Arabidopsis thaliana
7.9e-38
159.5
176
44.3
Pp3c5_570
Physcomitrella patens
1.4e-37
158.7
164
47.0
AT1G33060
Arabidopsis thaliana
2.3e-37
157.9
157
47.1
AT1G52880
Arabidopsis thaliana
2.3e-37
157.9
170
44.7
AT5G13180
Arabidopsis thaliana
2.3e-37
157.9
159
48.4
AT3G10490
Arabidopsis thaliana
3.0e-37
157.5
166
47.6
AT3G15170
Arabidopsis thaliana
3.0e-37
157.5
160
47.5
AT4G35580
Arabidopsis thaliana
3.0e-37
157.5
170
45.3
AT5G18270
Arabidopsis thaliana
3.0e-37
157.5
161
50.3
AT3G12910
Arabidopsis thaliana
3.9e-37
157.1
176
46.0
AT5G63790
Arabidopsis thaliana
3.9e-37
157.1
162
45.7
Pp3c16_23260
Physcomitrella patens
3.9e-37
157.1
166
44.6
AT5G08790
Arabidopsis thaliana
5.1e-37
156.8
162
46.3
AT3G10500
Arabidopsis thaliana
6.7e-37
156.4
165
44.2
AT5G53950
Arabidopsis thaliana
6.7e-37
156.4
160
48.1
AT3G12977
Arabidopsis thaliana
3.3e-36
154.1
168
45.8
AT4G28530
Arabidopsis thaliana
3.3e-36
154.1
182
43.4
AT5G04410
Arabidopsis thaliana
5.7e-36
153.3
165
43.6
AT1G32510
Arabidopsis thaliana
7.4e-36
152.9
172
41.9
AT1G52890
Arabidopsis thaliana
1.3e-35
152.1
165
46.1
AT3G15500
Arabidopsis thaliana
1.3e-35
152.1
157
48.4
AT5G24590
Arabidopsis thaliana
1.7e-35
151.8
182
42.9
AT5G09330
Arabidopsis thaliana
2.2e-35
151.4
164
43.9
AT2G33480
Arabidopsis thaliana
2.8e-35
151.0
158
45.6
AT3G04070
Arabidopsis thaliana
2.8e-35
151.0
184
42.9
AT3G10480
Arabidopsis thaliana
3.7e-35
150.6
194
41.8
Pp3c23_9520
Physcomitrella patens
3.7e-35
150.6
158
44.3
AT3G49530
Arabidopsis thaliana
6.3e-35
149.8
164
42.1
AT4G27410
Arabidopsis thaliana
6.3e-35
149.8
170
44.7
AT3G29035
Arabidopsis thaliana
4.1e-34
147.1
135
52.6
AT5G64060
Arabidopsis thaliana
4.1e-34
147.1
165
43.0
AT2G02450
Arabidopsis thaliana
9.1e-34
146.0
152
44.7
AT1G34190
Arabidopsis thaliana
8.5e-32
139.4
133
45.1
AT2G17040
Arabidopsis thaliana
2.5e-31
137.9
233
33.9
AT5G22290
Arabidopsis thaliana
2.5e-31
137.9
154
43.5
Pp3c20_18130
Physcomitrella patens
2.5e-31
137.9
160
43.8
AT2G27300
Arabidopsis thaliana
7.2e-31
136.3
218
33.9
AT1G01720
Arabidopsis thaliana
2.1e-30
134.8
162
42.0
AT1G34180
Arabidopsis thaliana
3.6e-30
134.0
143
42.7
AT1G77450
Arabidopsis thaliana
6.1e-30
133.3
198
36.9
AT1G32870
Arabidopsis thaliana
5.2e-29
130.2
159
40.9
AT3G44290
Arabidopsis thaliana
3.3e-28
127.5
129
42.6
AT5G04400
Arabidopsis thaliana
2.2e-27
124.8
147
43.5
AT4G01520
Arabidopsis thaliana
1.2e-22
109.0
161
36.0
AT5G22380
Arabidopsis thaliana
1.6e-22
108.6
163
37.4
AT4G01540
Arabidopsis thaliana
4.7e-22
107.1
158
36.1
AT5G64530
Arabidopsis thaliana
1.0e-21
105.9
173
34.1
AT1G02230
Arabidopsis thaliana
2.6e-20
101.3
154
39.0
AT4G01550
Arabidopsis thaliana
3.3e-20
100.9
160
36.2
AT3G44350
Arabidopsis thaliana
1.3e-19
99.0
164
34.8
AT3G04420
Arabidopsis thaliana
1.8e-18
95.1
134
40.3
AT1G01010
Arabidopsis thaliana
2.4e-18
94.7
159
34.0
AT1G02250
Arabidopsis thaliana
1.6e-17
92.0
154
37.0
AT1G02220
Arabidopsis thaliana
1.0e-16
89.4
136
39.0
Pp3c4_29470
Physcomitrella patens
6.5e-16
86.7
111
45.0
AT5G50820
Arabidopsis thaliana
8.5e-16
86.3
150
38.7
AT5G14000
Arabidopsis thaliana
5.2e-13
77.0
158
32.3
Pp3c27_7430
Physcomitrella patens
2.2e-11
71.6
93
36.6
AT3G55210
Arabidopsis thaliana
1.1e-10
69.3
204
26.0
AT5G18300
Arabidopsis thaliana
2.1e-06
55.1
130
30.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (87 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (32 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing