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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c11_22520
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c11_22520
Physcomitrella patens
3.3e-129
462.6
269
100.0
Pp3c7_4200
Physcomitrella patens
2.2e-112
406.8
269
87.4
AT1G19580
Arabidopsis thaliana
1.6e-70
267.7
263
48.3
AT1G47260
Arabidopsis thaliana
2.7e-70
266.9
266
46.6
Pp3c4_16870
Physcomitrella patens
4.1e-55
216.5
216
58.8
AT5G66510
Arabidopsis thaliana
7.1e-55
215.7
273
53.1
CM13G00520
Cyanidioschyzon merolae
5.4e-47
189.5
262
48.9
gsu30790
Galdieria sulphuraria
1.2e-41
171.8
239
47.3
gsu91670
Galdieria sulphuraria
4.8e-35
149.8
254
33.1
emh726740
Emiliania huxleyi
1.5e-28
128.3
212
45.8
Sro68_g037840
Seminavis robusta
1.9e-28
127.9
225
46.7
PSNMU-V1.4_AUG-EV-PASAV3_0096010
Pseudo-nitzschia multistriata
2.5e-28
127.5
262
38.5
Sro740_g195550
Seminavis robusta
7.3e-28
125.9
216
48.6
Cre09.g415850
Chlamydomonas reinhardtii
4.8e-27
123.2
290
41.4
AA0003G02530
Aureococcus anophagefferens
1.8e-26
121.3
164
39.6
AA0230G00030
Aureococcus anophagefferens
1.8e-26
121.3
164
39.6
ps00G40950
Pseudo-nitzschia multiseries
1.2e-25
118.6
173
41.0
Sro731_g194150
Seminavis robusta
2.6e-25
117.5
176
54.5
ccr103560
Chondrus crispus
2.4e-23
110.9
251
39.0
fso167070
Fistulifera solaris
4.2e-23
110.2
263
38.4
ptri147470
Phaeodactylum tricornutum
2.7e-22
107.5
219
45.7
pte791750
Paramecium tetraurelia
6.0e-22
106.3
222
30.6
pte725170
Paramecium tetraurelia
1.3e-21
105.1
222
30.2
sya00G83970
Synedra acus
1.8e-21
104.8
189
44.4
Ec-10_002770
Ectocarpus siliculosus
2.3e-21
104.4
206
42.2
Cre12.g516450
Chlamydomonas reinhardtii
3.0e-21
104.0
211
44.5
Sro49_g028820
Seminavis robusta
3.0e-21
104.0
254
37.8
sya00G174380
Synedra acus
3.9e-21
103.6
163
52.1
ps00G37150
Pseudo-nitzschia multiseries
6.7e-21
102.8
260
31.5
Naga_100199g6
Nannochloropsis gaditana
8.7e-21
102.4
225
30.7
Naga_100187g5
Nannochloropsis gaditana
1.1e-20
102.1
210
45.2
Pp3c1_7500
Physcomitrella patens
1.9e-20
101.3
173
33.5
fso79830
Fistulifera solaris
4.3e-20
100.1
253
37.2
tps147910
Thalassiosira pseudonana
9.6e-20
99.0
231
40.7
fso122780
Fistulifera solaris
1.6e-19
98.2
253
36.4
tho357060
Thalassiosira oceanica
6.2e-19
96.3
215
32.1
sya00G77040
Synedra acus
6.9e-18
92.8
204
28.9
ps00G145580
Pseudo-nitzschia multiseries
9.0e-18
92.4
262
26.3
ptri08410
Phaeodactylum tricornutum
2.0e-17
91.3
230
30.0
ptri08530
Phaeodactylum tricornutum
2.0e-17
91.3
230
30.0
ptri112460
Phaeodactylum tricornutum
2.0e-17
91.3
242
39.3
Cre06.g293850
Chlamydomonas reinhardtii
3.4e-17
90.5
192
30.7
CC00G41180
Cyclotella cryptica
4.5e-17
90.1
238
38.7
gene2813
Fragilariopsis cylindrus
5.8e-17
89.7
161
50.9
gsu34770
Galdieria sulphuraria
5.8e-17
89.7
167
29.9
ps00G81530
Pseudo-nitzschia multiseries
7.6e-17
89.4
202
30.2
fso121810
Fistulifera solaris
4.9e-16
86.7
251
39.0
emh676960
Emiliania huxleyi
8.4e-16
85.9
74
55.4
PSNMU-V1.4_AUG-EV-PASAV3_0099860
Pseudo-nitzschia multistriata
1.1e-15
85.5
319
24.1
gene14884
Fragilariopsis cylindrus
1.4e-15
85.1
285
25.6
gene4461
Fragilariopsis cylindrus
1.4e-15
85.1
194
29.4
tho589540
Thalassiosira oceanica
1.9e-15
84.7
112
38.4
CC00G151430
Cyclotella cryptica
3.2e-15
84.0
161
46.0
AA0002G00020
Aureococcus anophagefferens
5.5e-15
83.2
171
49.7
fso198020
Fistulifera solaris
2.7e-14
80.9
170
29.4
pte56560
Paramecium tetraurelia
4.6e-14
80.1
110
35.5
emh74020
Emiliania huxleyi
6.0e-14
79.7
75
41.3
pte50390
Paramecium tetraurelia
6.0e-14
79.7
110
35.5
Sro796_g203670
Seminavis robusta
7.9e-14
79.3
191
28.8
fso23950
Fistulifera solaris
1.8e-13
78.2
170
28.2
Ec-07_004610
Ectocarpus siliculosus
6.2e-11
69.7
194
39.2
tho286660
Thalassiosira oceanica
1.1e-10
68.9
282
35.1
Pp3c7_19540
Physcomitrella patens
1.8e-10
68.2
173
42.2
CC00G36640
Cyclotella cryptica
2.4e-10
67.8
279
33.7
pte113000
Paramecium tetraurelia
2.4e-10
67.8
103
30.1
AT3G48680
Arabidopsis thaliana
5.3e-10
66.6
144
48.6
pte474410
Paramecium tetraurelia
6.9e-10
66.2
101
29.7
tps56830
Thalassiosira pseudonana
1.2e-09
65.5
176
29.0
pte777030
Paramecium tetraurelia
2.6e-09
64.3
222
24.8
AT1G47420
Arabidopsis thaliana
7.6e-09
62.8
86
40.7
AT5G63510
Arabidopsis thaliana
1.4e-07
58.5
171
43.9
tho558160
Thalassiosira oceanica
3.2e-07
57.4
209
24.9
CC00G42060
Cyclotella cryptica
5.5e-07
56.6
242
25.2
tps151070
Thalassiosira pseudonana
7.2e-07
56.2
122
50.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (4 genes)
Thalassiosira pseudonana (3 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (4 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (3 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (7 genes)
Seminavis robusta (5 genes)
Synedra acus (3 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
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