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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c10_17390
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c10_17390
Physcomitrella patens
0.0e+00
2103.9
1115
100.0
Pp3c3_25850
Physcomitrella patens
0.0e+00
1508.8
1116
73.7
AT1G03160
Arabidopsis thaliana
8.0e-169
596.3
901
39.2
Cre14.g616600
Chlamydomonas reinhardtii
7.6e-95
350.5
988
29.5
Naga_100193g6
Nannochloropsis gaditana
1.9e-53
213.0
609
28.7
gsu20570
Galdieria sulphuraria
1.7e-41
173.3
650
26.8
emh635400
Emiliania huxleyi
4.7e-36
155.2
594
27.1
ptri64460
Phaeodactylum tricornutum
6.3e-33
144.8
711
24.8
sya00G162800
Synedra acus
2.7e-31
139.4
559
26.3
CC00G83200
Cyclotella cryptica
1.5e-29
133.7
424
31.8
Sro1451_g273840
Seminavis robusta
2.6e-26
122.9
690
24.9
gene17147
Fragilariopsis cylindrus
5.7e-26
121.7
343
29.4
tho198080
Thalassiosira oceanica
1.6e-23
113.6
594
25.9
ccr52860
Chondrus crispus
7.8e-23
111.3
504
24.8
fso114430
Fistulifera solaris
1.9e-21
106.7
236
36.0
fso188000
Fistulifera solaris
1.8e-19
100.1
236
35.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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