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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Cre08.g385350
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Cre08.g385350
Chlamydomonas reinhardtii
9.3e-311
1067.4
797
100.0
Cre19.g750947
Chlamydomonas reinhardtii
2.0e-23
112.8
95
54.7
Cre03.g209953
Chlamydomonas reinhardtii
1.4e-16
90.1
84
50.0
Cre13.g602750
Chlamydomonas reinhardtii
1.9e-13
79.7
113
45.1
Cre17.g729600
Chlamydomonas reinhardtii
4.7e-12
75.1
105
39.0
AT5G67180
Arabidopsis thaliana
1.0e-11
73.9
67
50.7
AT4G36920
Arabidopsis thaliana
2.3e-11
72.8
66
50.0
AT2G39250
Arabidopsis thaliana
3.1e-11
72.4
66
53.0
AT3G54990
Arabidopsis thaliana
6.8e-11
71.2
66
51.5
AT2G28550
Arabidopsis thaliana
1.5e-10
70.1
66
50.0
AT5G60120
Arabidopsis thaliana
2.6e-10
69.3
121
36.4
Cre10.g441300
Chlamydomonas reinhardtii
5.8e-10
68.2
67
41.8
Cre02.g100100
Chlamydomonas reinhardtii
2.4e-08
62.8
75
40.0
AT1G72360
Arabidopsis thaliana
3.2e-08
62.4
115
36.5
Pp3c15_4400
Physcomitrella patens
7.0e-08
61.2
63
46.0
Pp3c18_3900
Physcomitrella patens
9.2e-08
60.8
65
44.6
Pp3c6_21840
Physcomitrella patens
1.2e-07
60.5
102
37.3
Pp3c5_2780
Physcomitrella patens
1.2e-07
60.5
73
43.8
Cre09.g390957
Chlamydomonas reinhardtii
1.6e-07
60.1
88
38.6
AT2G47520
Arabidopsis thaliana
7.8e-07
57.8
104
33.7
AT3G54320
Arabidopsis thaliana
7.8e-07
57.8
73
42.5
Pp3c15_24790
Physcomitrella patens
7.8e-07
57.8
94
35.1
Pp3c15_24980
Physcomitrella patens
7.8e-07
57.8
94
35.1
AT1G79700
Arabidopsis thaliana
1.0e-06
57.4
87
36.8
AT5G50080
Arabidopsis thaliana
1.0e-06
57.4
76
44.7
AT2G33710
Arabidopsis thaliana
1.3e-06
57.0
72
50.0
AT5G10510
Arabidopsis thaliana
1.3e-06
57.0
64
46.9
Pp3c23_13360
Physcomitrella patens
1.3e-06
57.0
85
36.5
Pp3c4_27870
Physcomitrella patens
1.3e-06
57.0
95
38.9
Pp3c22_17873
Physcomitrella patens
1.7e-06
56.6
76
36.8
AT1G53910
Arabidopsis thaliana
3.0e-06
55.8
75
44.0
AT3G14230
Arabidopsis thaliana
3.0e-06
55.8
102
34.3
Pp3c9_25400
Physcomitrella patens
3.0e-06
55.8
65
43.1
Pp3c10_24550
Physcomitrella patens
3.9e-06
55.5
84
36.9
AT1G72570
Arabidopsis thaliana
5.0e-06
55.1
86
37.2
AT2G41710
Arabidopsis thaliana
5.0e-06
55.1
63
41.3
Pp3c1_16700
Physcomitrella patens
5.0e-06
55.1
123
33.3
AT1G16060
Arabidopsis thaliana
6.6e-06
54.7
83
38.6
AT5G65510
Arabidopsis thaliana
6.6e-06
54.7
82
40.2
AT3G20840
Arabidopsis thaliana
8.6e-06
54.3
86
36.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (20 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (12 genes)
Chlamydomonas reinhardtii (8 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing