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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G94700
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G94700
Cyclotella cryptica
9.5e-130
464.2
225
100.0
CC00G58700
Cyclotella cryptica
2.3e-67
256.9
252
55.6
CC00G174360
Cyclotella cryptica
4.7e-36
152.9
225
36.4
tps83360
Thalassiosira pseudonana
3.0e-35
150.2
226
39.4
tho198720
Thalassiosira oceanica
1.7e-25
117.9
228
33.8
tho339420
Thalassiosira oceanica
3.7e-25
116.7
225
34.2
CC00G118320
Cyclotella cryptica
2.4e-24
114.0
84
59.5
CC00G198360
Cyclotella cryptica
6.8e-19
95.9
178
32.0
fso22030
Fistulifera solaris
1.9e-16
87.8
211
30.8
ptri61420
Phaeodactylum tricornutum
1.6e-15
84.7
219
26.9
gene12535
Fragilariopsis cylindrus
1.0e-14
82.0
223
27.4
fso01140
Fistulifera solaris
1.0e-14
82.0
219
27.9
ptri16340
Phaeodactylum tricornutum
1.0e-14
82.0
214
27.6
ptri26670
Phaeodactylum tricornutum
1.0e-14
82.0
214
27.6
ptri81600
Phaeodactylum tricornutum
1.0e-14
82.0
214
27.6
CC00G144050
Cyclotella cryptica
1.7e-14
81.3
224
24.6
ptri06840
Phaeodactylum tricornutum
1.7e-14
81.3
219
27.4
tps12310
Thalassiosira pseudonana
1.7e-14
81.3
223
28.3
CC00G72120
Cyclotella cryptica
3.9e-14
80.1
162
31.5
ptri102420
Phaeodactylum tricornutum
5.1e-14
79.7
214
27.1
ptri179870
Phaeodactylum tricornutum
5.1e-14
79.7
214
27.1
CC00G28550
Cyclotella cryptica
1.5e-13
78.2
224
26.3
ptri85160
Phaeodactylum tricornutum
1.9e-13
77.8
219
26.0
ptri26830
Phaeodactylum tricornutum
4.3e-13
76.6
217
24.4
sya00G135000
Synedra acus
7.3e-13
75.9
214
27.1
gene3735
Fragilariopsis cylindrus
3.6e-12
73.6
215
27.0
ptri240440
Phaeodactylum tricornutum
8.1e-12
72.4
219
25.6
gene8416
Fragilariopsis cylindrus
1.4e-11
71.6
202
26.7
ptri214330
Phaeodactylum tricornutum
5.8e-10
66.2
165
26.1
tho48640
Thalassiosira oceanica
9.9e-10
65.5
224
24.6
tho132360
Thalassiosira oceanica
9.9e-10
65.5
224
24.6
gene4700
Fragilariopsis cylindrus
1.4e-08
61.6
214
27.1
gene4504
Fragilariopsis cylindrus
1.4e-08
61.6
216
24.1
ptri43050
Phaeodactylum tricornutum
2.4e-08
60.8
201
24.9
gene15717
Fragilariopsis cylindrus
4.1e-08
60.1
215
22.3
gene10720
Fragilariopsis cylindrus
9.2e-08
58.9
214
24.8
gene4392
Fragilariopsis cylindrus
1.2e-07
58.5
215
23.7
gene9752
Fragilariopsis cylindrus
1.6e-07
58.2
175
27.4
gene16671
Fragilariopsis cylindrus
2.1e-07
57.8
215
23.3
gene6113
Fragilariopsis cylindrus
4.6e-07
56.6
215
24.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (12 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (11 genes)
Cyclotella cryptica (8 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing