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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G47860
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G47860
Cyclotella cryptica
5.9e-144
511.5
254
100.0
tps205230
Thalassiosira pseudonana
1.4e-73
277.7
244
54.1
tho150100
Thalassiosira oceanica
2.0e-67
257.3
223
52.0
CC00G33790
Cyclotella cryptica
2.6e-67
256.9
246
52.0
CC00G33780
Cyclotella cryptica
1.4e-41
171.4
170
51.8
tho126780
Thalassiosira oceanica
2.0e-30
134.4
115
55.7
ccr56620
Chondrus crispus
1.7e-26
121.3
213
31.9
Naga_100076g12
Nannochloropsis gaditana
5.3e-12
73.2
206
29.1
Pp3c25_9740
Physcomitrella patens
7.7e-11
69.3
206
30.1
AT5G10820
Arabidopsis thaliana
1.0e-10
68.9
216
27.3
Pp3c19_4580
Physcomitrella patens
8.5e-10
65.9
178
26.4
AT2G32040
Arabidopsis thaliana
5.5e-09
63.2
158
30.4
emh565100
Emiliania huxleyi
9.4e-09
62.4
169
29.6
AA0010G02330
Aureococcus anophagefferens
1.2e-08
62.0
151
31.8
AT1G79710
Arabidopsis thaliana
2.7e-08
60.8
196
26.5
Pp3c22_1880
Physcomitrella patens
3.6e-08
60.5
178
25.3
tps62480
Thalassiosira pseudonana
6.1e-08
59.7
179
27.4
CC00G177780
Cyclotella cryptica
1.8e-07
58.2
179
28.5
Ec-02_005800
Ectocarpus siliculosus
5.2e-07
56.6
176
28.4
emh540610
Emiliania huxleyi
3.4e-06
53.9
121
27.3
Pp3c10_2680
Physcomitrella patens
7.5e-06
52.8
123
26.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing