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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G46510
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G46510
Cyclotella cryptica
0.0e+00
1440.6
703
100.0
tho22100
Thalassiosira oceanica
5.1e-105
383.6
697
37.7
Sro1369_g266930
Seminavis robusta
2.0e-101
371.7
698
37.7
gene14800
Fragilariopsis cylindrus
6.9e-86
320.1
696
34.2
ps00G29420
Pseudo-nitzschia multiseries
2.0e-77
292.0
708
33.5
PSNMU-V1.4_AUG-EV-PASAV3_0030360
Pseudo-nitzschia multistriata
3.5e-77
291.2
718
33.6
fso31390
Fistulifera solaris
9.7e-64
246.5
693
31.7
fso118670
Fistulifera solaris
6.3e-63
243.8
695
30.6
Pp3c10_8190
Physcomitrella patens
1.8e-25
119.4
540
24.1
sya00G67070
Synedra acus
5.2e-25
117.9
281
32.7
ENSG00000060642
Homo sapiens
3.3e-19
98.6
436
24.3
Ec-17_003500
Ectocarpus siliculosus
5.6e-19
97.8
711
21.9
AT1G11880
Arabidopsis thaliana
5.8e-16
87.8
523
23.7
FBgn0265174
Drosophila melanogaster
2.1e-13
79.3
518
21.4
SPAC18B11.05
Schizosaccharomyces pombe
3.6e-10
68.6
224
23.2
YBR004C
Saccharomyces cerevisiae strain S288C
1.7e-07
59.7
280
23.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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