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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G31330
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G31330
Cyclotella cryptica
1.1e-293
1010.0
514
100.0
tho441720
Thalassiosira oceanica
5.1e-86
320.1
381
47.5
tps200150
Thalassiosira pseudonana
3.1e-83
310.8
313
55.0
ptri209620
Phaeodactylum tricornutum
1.4e-64
248.8
538
36.1
PSNMU-V1.4_AUG-EV-PASAV3_0104030
Pseudo-nitzschia multistriata
1.1e-56
222.6
568
33.3
fso58700
Fistulifera solaris
3.5e-55
217.6
413
35.1
Sro1969_g308490
Seminavis robusta
3.5e-55
217.6
560
32.3
fso144890
Fistulifera solaris
1.5e-53
212.2
478
33.3
gene8065
Fragilariopsis cylindrus
6.5e-49
196.8
310
39.7
sya00G113220
Synedra acus
6.1e-47
190.3
418
34.2
ps00G76180
Pseudo-nitzschia multiseries
9.7e-45
183.0
370
34.6
Naga_100321g4
Nannochloropsis gaditana
4.7e-39
164.1
512
29.1
WBGene00017696
Caenorhabditis elegans
5.0e-33
144.1
379
30.1
AT1G49980
Arabidopsis thaliana
1.2e-31
139.4
355
31.5
gsu07230
Galdieria sulphuraria
2.0e-29
132.1
372
28.2
Ec-14_004450
Ectocarpus siliculosus
7.4e-29
130.2
573
24.8
emh482430
Emiliania huxleyi
3.7e-28
127.9
301
31.6
emh197460
Emiliania huxleyi
3.7e-28
127.9
301
31.6
ENSG00000122008
Homo sapiens
4.1e-27
124.4
555
24.9
Cre02.g079850
Chlamydomonas reinhardtii
4.5e-26
120.9
303
30.4
pte538790
Paramecium tetraurelia
8.8e-22
106.7
488
23.2
pte531460
Paramecium tetraurelia
2.0e-21
105.5
288
28.5
SPCC553.07c
Schizosaccharomyces pombe
2.6e-21
105.1
353
27.5
Ec-01_006080
Ectocarpus siliculosus
6.6e-09
63.9
204
29.4
ENSG00000135945
Homo sapiens
6.6e-09
63.9
209
26.8
AT5G44740
Arabidopsis thaliana
3.3e-08
61.6
194
26.8
Cre03.g148050
Chlamydomonas reinhardtii
9.5e-08
60.1
219
26.0
FBgn0037141
Drosophila melanogaster
1.2e-07
59.7
394
23.4
WBGene00018721
Caenorhabditis elegans
2.8e-07
58.5
197
25.9
gsu71910
Galdieria sulphuraria
3.6e-07
58.2
174
24.7
gsu33630
Galdieria sulphuraria
1.4e-06
56.2
279
25.8
emh217920
Emiliania huxleyi
1.8e-06
55.8
91
36.3
gsu142230
Galdieria sulphuraria
1.8e-06
55.8
215
26.0
Naga_100010g99
Nannochloropsis gaditana
2.3e-06
55.5
115
30.4
CM01G00620
Cyanidioschyzon merolae
3.0e-06
55.1
89
32.6
Naga_100015g71
Nannochloropsis gaditana
4.0e-06
54.7
112
31.2
Pp3c14_23660
Physcomitrella patens
6.8e-06
53.9
158
29.7
Sro88_g046710
Seminavis robusta
8.9e-06
53.5
145
28.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (4 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (2 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing