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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G199720
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G199720
Cyclotella cryptica
0.0e+00
1236.1
650
100.0
tps150610
Thalassiosira pseudonana
9.0e-181
635.2
557
63.4
tho293680
Thalassiosira oceanica
1.2e-156
555.1
675
50.2
sya00G141680
Synedra acus
3.7e-150
533.5
628
50.2
ptri163100
Phaeodactylum tricornutum
2.1e-145
517.7
616
49.0
Sro1014_g231440
Seminavis robusta
5.9e-132
473.0
640
47.0
sya00G92090
Synedra acus
1.3e-118
428.7
601
44.8
PSNMU-V1.4_AUG-EV-PASAV3_0064620
Pseudo-nitzschia multistriata
2.0e-108
394.8
726
38.3
ps00G68460
Pseudo-nitzschia multiseries
9.5e-98
359.4
709
37.2
gene7015
Fragilariopsis cylindrus
1.9e-90
335.1
579
39.2
Ec-23_000840
Ectocarpus siliculosus
4.0e-88
327.4
597
40.5
Pp3c1_36770
Physcomitrella patens
5.6e-82
307.0
577
36.2
AT5G50340
Arabidopsis thaliana
3.8e-78
294.3
595
36.5
gsu144390
Galdieria sulphuraria
6.9e-72
273.5
567
35.6
sya00G212570
Synedra acus
3.5e-68
261.2
294
51.4
sya00G40320
Synedra acus
8.7e-67
256.5
556
34.4
CM11G02500
Cyanidioschyzon merolae
1.0e-59
233.0
709
30.5
Cre07.g317908
Chlamydomonas reinhardtii
1.9e-45
185.7
596
31.0
ccr120340
Chondrus crispus
1.0e-11
73.6
118
37.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (4 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing