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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G186920
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G186920
Cyclotella cryptica
0.0e+00
1876.3
1020
100.0
tps211780
Thalassiosira pseudonana
1.6e-147
525.4
992
39.7
tho22820
Thalassiosira oceanica
5.6e-137
490.3
1046
38.0
sya00G202080
Synedra acus
1.2e-102
376.3
905
30.7
PSNMU-V1.4_AUG-EV-PASAV3_0001760
Pseudo-nitzschia multistriata
7.2e-100
367.1
940
32.3
ptri94610
Phaeodactylum tricornutum
7.0e-95
350.5
898
31.7
Sro256_g100640
Seminavis robusta
2.6e-86
322.0
780
32.1
gene2837
Fragilariopsis cylindrus
2.3e-82
308.9
674
34.1
fso03010
Fistulifera solaris
6.3e-72
274.2
797
30.5
ps00G00900
Pseudo-nitzschia multiseries
9.5e-68
260.4
269
48.7
fso166870
Fistulifera solaris
4.9e-64
248.1
649
31.4
Ec-06_007410
Ectocarpus siliculosus
2.7e-30
136.0
269
29.7
Pp3c22_7360
Physcomitrella patens
4.2e-23
112.1
293
30.7
AT5G16630
Arabidopsis thaliana
9.6e-20
100.9
311
27.7
ENSG00000154767
Homo sapiens
2.1e-19
99.8
272
28.3
CM12G00970
Cyanidioschyzon merolae
8.1e-19
97.8
278
27.7
FBgn0004698
Drosophila melanogaster
1.1e-18
97.4
258
28.7
gsu84710
Galdieria sulphuraria
2.4e-18
96.3
256
26.6
SPCC4G3.10c
Schizosaccharomyces pombe
6.9e-18
94.7
267
28.5
gsu84730
Galdieria sulphuraria
2.6e-17
92.8
252
26.6
ccr45960
Chondrus crispus
7.9e-14
81.3
232
27.2
Cre12.g557400
Chlamydomonas reinhardtii
2.3e-13
79.7
294
24.5
SPAC12B10.12c
Schizosaccharomyces pombe
2.3e-13
79.7
276
25.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing