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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G133070
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G133070
Cyclotella cryptica
3.0e-280
965.7
663
100.0
tps42220
Thalassiosira pseudonana
2.6e-143
510.8
673
57.4
tho22520
Thalassiosira oceanica
1.6e-55
219.2
648
34.1
ptri226990
Phaeodactylum tricornutum
2.2e-41
172.2
398
31.4
Sro232_g093790
Seminavis robusta
1.6e-39
166.0
457
39.6
emh275890
Emiliania huxleyi
1.8e-35
152.5
270
37.8
gene4813
Fragilariopsis cylindrus
5.6e-29
131.0
130
52.3
gene3872
Fragilariopsis cylindrus
1.5e-26
122.9
589
30.6
tho398680
Thalassiosira oceanica
1.5e-21
106.3
97
50.5
AA0212G00020
Aureococcus anophagefferens
8.1e-20
100.5
109
53.2
CC00G19400
Cyclotella cryptica
1.8e-19
99.4
80
55.0
Pp3c23_20740
Physcomitrella patens
8.5e-09
63.9
104
30.8
Cre12.g521200
Chlamydomonas reinhardtii
3.2e-08
62.0
76
42.1
Ec-04_005500
Ectocarpus siliculosus
1.6e-07
59.7
115
36.5
ENSG00000035928
Homo sapiens
2.3e-06
55.8
103
35.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (0 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing