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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G131440
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G131440
Cyclotella cryptica
2.5e-262
905.6
452
100.0
CC00G20910
Cyclotella cryptica
1.1e-180
634.4
482
69.9
CC00G31060
Cyclotella cryptica
2.5e-89
330.9
373
52.3
CC00G74460
Cyclotella cryptica
9.6e-89
328.9
281
65.8
CC00G81110
Cyclotella cryptica
1.7e-69
265.0
208
68.8
CC00G100670
Cyclotella cryptica
3.7e-56
220.7
214
60.7
CC00G95370
Cyclotella cryptica
2.2e-53
211.5
178
66.3
CC00G124060
Cyclotella cryptica
8.0e-27
123.2
102
67.6
CC00G176370
Cyclotella cryptica
1.0e-26
122.9
119
60.5
CC00G133980
Cyclotella cryptica
1.3e-24
115.9
196
33.7
ps00G177220
Pseudo-nitzschia multiseries
6.6e-21
103.6
258
30.2
ps00G108840
Pseudo-nitzschia multiseries
1.2e-19
99.4
300
29.7
ps00G149740
Pseudo-nitzschia multiseries
2.8e-19
98.2
307
27.7
ps00G77430
Pseudo-nitzschia multiseries
6.1e-19
97.1
221
31.2
CC00G202760
Cyclotella cryptica
1.4e-18
95.9
169
35.5
Sro3797_g351120
Seminavis robusta
1.4e-18
95.9
289
31.5
PSNMU-V1.4_AUG-EV-PASAV3_0011870
Pseudo-nitzschia multistriata
8.9e-18
93.2
187
34.2
CC00G170910
Cyclotella cryptica
4.9e-16
87.4
123
39.0
PSNMU-V1.4_AUG-EV-PASAV3_0006560
Pseudo-nitzschia multistriata
4.9e-16
87.4
181
32.6
sya00G132220
Synedra acus
2.4e-15
85.1
176
32.4
sya00G40830
Synedra acus
1.6e-14
82.4
517
21.7
CC00G13030
Cyclotella cryptica
6.6e-13
77.0
273
25.3
CC00G208740
Cyclotella cryptica
1.9e-12
75.5
180
31.7
sya00G225690
Synedra acus
5.6e-12
73.9
395
26.1
ps00G36710
Pseudo-nitzschia multiseries
1.4e-10
69.3
211
29.4
sya00G153070
Synedra acus
1.4e-10
69.3
317
27.8
sya00G197540
Synedra acus
1.4e-10
69.3
317
27.8
sya00G32780
Synedra acus
3.1e-10
68.2
247
24.3
sya00G238580
Synedra acus
3.1e-10
68.2
187
27.3
ps00G37510
Pseudo-nitzschia multiseries
3.4e-09
64.7
217
25.3
sya00G221970
Synedra acus
8.3e-08
60.1
263
23.6
ps00G191010
Pseudo-nitzschia multiseries
1.1e-07
59.7
180
27.8
sya00G249900
Synedra acus
1.9e-07
58.9
277
25.6
CC00G55650
Cyclotella cryptica
3.2e-07
58.2
55
47.3
sya00G233930
Synedra acus
1.2e-06
56.2
91
31.9
sya00G07380
Synedra acus
4.6e-06
54.3
168
27.4
CC00G89920
Cyclotella cryptica
6.0e-06
53.9
162
28.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (7 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (16 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (11 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing