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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G01260
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G01260
Cyclotella cryptica
6.7e-78
291.6
150
100.0
tps41040
Thalassiosira pseudonana
9.4e-48
191.4
191
57.6
tho333400
Thalassiosira oceanica
6.9e-43
175.3
150
62.7
Sro538_g162560
Seminavis robusta
3.3e-37
156.4
131
61.1
fso196320
Fistulifera solaris
7.4e-37
155.2
122
67.2
fso42050
Fistulifera solaris
6.3e-36
152.1
122
63.9
sya00G193810
Synedra acus
5.5e-32
139.0
149
50.3
sya00G06370
Synedra acus
1.6e-31
137.5
149
49.7
ps00G160180
Pseudo-nitzschia multiseries
1.7e-28
127.5
146
52.1
gene18964
Fragilariopsis cylindrus
3.2e-24
113.2
120
53.3
ptri228410
Phaeodactylum tricornutum
2.3e-22
107.1
111
50.5
PSNMU-V1.4_AUG-EV-PASAV3_0089660
Pseudo-nitzschia multistriata
2.0e-21
104.0
142
45.8
emh475150
Emiliania huxleyi
5.7e-21
102.4
144
48.6
emh475250
Emiliania huxleyi
6.3e-20
99.0
142
47.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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