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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G01250
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G01250
Cyclotella cryptica
6.2e-197
688.0
344
100.0
tps67790
Thalassiosira pseudonana
5.8e-102
372.5
261
69.3
sya00G230280
Synedra acus
1.8e-63
244.6
281
49.8
Sro25_g017130
Seminavis robusta
1.9e-57
224.6
315
41.3
Cre06.g306650
Chlamydomonas reinhardtii
3.0e-10
67.8
185
32.4
sya00G44610
Synedra acus
3.0e-10
67.8
165
32.1
sya00G228180
Synedra acus
4.4e-09
63.9
239
28.0
fso30380
Fistulifera solaris
9.8e-09
62.8
217
28.1
Pp3c23_3440
Physcomitrella patens
3.1e-07
57.8
185
25.9
AT5G51740
Arabidopsis thaliana
4.1e-07
57.4
179
34.1
fso121650
Fistulifera solaris
9.1e-07
56.2
169
29.0
gsu50660
Galdieria sulphuraria
1.2e-06
55.8
180
27.8
Sro436_g142580
Seminavis robusta
1.6e-06
55.5
212
25.9
Naga_100031g20
Nannochloropsis gaditana
7.7e-06
53.1
203
28.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (3 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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