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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ATMG00240
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ATMG00240
Arabidopsis thaliana
1.4e-57
223.4
112
100.0
AT4G23160
Arabidopsis thaliana
2.3e-23
109.8
79
63.3
ATMG00810
Arabidopsis thaliana
1.0e-15
84.3
81
48.1
ccr162020
Chondrus crispus
1.9e-09
63.5
80
40.0
ccr162420
Chondrus crispus
1.9e-09
63.5
80
40.0
ccr12560
Chondrus crispus
2.4e-09
63.2
80
40.0
ccr52380
Chondrus crispus
2.4e-09
63.2
80
40.0
ccr12620
Chondrus crispus
7.1e-09
61.6
80
38.8
ccr77380
Chondrus crispus
9.3e-09
61.2
78
37.2
Pp3c9_20430
Physcomitrella patens
1.6e-08
60.5
74
35.1
Naga_100294g4
Nannochloropsis gaditana
1.0e-07
57.8
76
40.8
Naga_100294g10
Nannochloropsis gaditana
1.7e-07
57.0
76
40.8
tho139880
Thalassiosira oceanica
2.3e-07
56.6
109
35.8
tho158000
Thalassiosira oceanica
2.3e-07
56.6
109
35.8
Naga_101146g2
Nannochloropsis gaditana
3.9e-07
55.8
76
39.5
Naga_100252g2
Nannochloropsis gaditana
5.1e-07
55.5
76
39.5
Naga_101065g1
Nannochloropsis gaditana
5.1e-07
55.5
76
39.5
Naga_100497g3
Nannochloropsis gaditana
5.1e-07
55.5
76
39.5
Naga_100055g1
Nannochloropsis gaditana
6.6e-07
55.1
76
39.5
Naga_101002g3
Nannochloropsis gaditana
6.6e-07
55.1
76
39.5
ccr46400
Chondrus crispus
8.7e-07
54.7
80
31.2
ccr158720
Chondrus crispus
8.7e-07
54.7
80
31.2
Naga_100999g3
Nannochloropsis gaditana
8.7e-07
54.7
75
40.0
ccr170160
Chondrus crispus
1.1e-06
54.3
81
33.3
Pp3c7_15950
Physcomitrella patens
1.1e-06
54.3
79
39.2
Naga_100235g1
Nannochloropsis gaditana
1.5e-06
53.9
76
39.5
Pp3c1_13760
Physcomitrella patens
1.5e-06
53.9
79
34.2
ccr121940
Chondrus crispus
1.9e-06
53.5
80
31.2
ccr162000
Chondrus crispus
3.3e-06
52.8
80
30.0
Pp3c5_27270
Physcomitrella patens
3.3e-06
52.8
64
37.5
Pp3c4_18500
Physcomitrella patens
4.3e-06
52.4
76
36.8
tho56660
Thalassiosira oceanica
5.6e-06
52.0
81
34.6
tho111660
Thalassiosira oceanica
5.6e-06
52.0
81
33.3
tho329240
Thalassiosira oceanica
9.6e-06
51.2
99
34.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (5 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (10 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (11 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing