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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G62460
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G62460
Arabidopsis thaliana
2.9e-89
330.1
308
100.0
AT3G47550
Arabidopsis thaliana
9.2e-51
202.2
184
61.4
AT2G02960
Arabidopsis thaliana
4.5e-37
156.8
119
62.2
AT1G14260
Arabidopsis thaliana
9.3e-35
149.1
118
64.4
AT5G38070
Arabidopsis thaliana
3.0e-25
117.5
108
51.9
AT2G01275
Arabidopsis thaliana
5.1e-25
116.7
107
47.7
AT1G02610
Arabidopsis thaliana
6.0e-18
93.2
55
63.6
AT4G02075
Arabidopsis thaliana
7.9e-18
92.8
61
59.0
Cre09.g400738
Chlamydomonas reinhardtii
6.7e-17
89.7
58
58.6
FBgn0034546
Drosophila melanogaster
1.9e-08
61.6
62
41.9
gsu131320
Galdieria sulphuraria
4.3e-08
60.5
51
47.1
ENSG00000139266
Homo sapiens
9.7e-08
59.3
56
39.3
AT4G32670
Arabidopsis thaliana
2.8e-07
57.8
51
49.0
ENSG00000173926
Homo sapiens
3.7e-07
57.4
47
44.7
CM20G05480
Cyanidioschyzon merolae
4.8e-07
57.0
60
41.7
Pp3c9_10370
Physcomitrella patens
8.2e-07
56.2
47
46.8
Pp3c9_10380
Physcomitrella patens
8.2e-07
56.2
47
46.8
Cre12.g517850
Chlamydomonas reinhardtii
1.1e-06
55.8
61
45.9
FBgn0035983
Drosophila melanogaster
1.8e-06
55.1
47
48.9
AT4G34100
Arabidopsis thaliana
2.4e-06
54.7
74
35.1
ENSG00000144583
Homo sapiens
2.4e-06
54.7
50
42.0
ENSG00000183654
Homo sapiens
2.4e-06
54.7
50
40.0
Pp3c15_8020
Physcomitrella patens
2.4e-06
54.7
47
44.7
Pp3c15_7960
Physcomitrella patens
2.4e-06
54.7
47
44.7
ccr169360
Chondrus crispus
3.1e-06
54.3
54
37.0
ENSG00000099785
Homo sapiens
3.1e-06
54.3
50
38.0
pte175990
Paramecium tetraurelia
3.1e-06
54.3
59
39.0
FBgn0029877
Drosophila melanogaster
6.9e-06
53.1
48
41.7
Ec-27_003040
Ectocarpus siliculosus
9.1e-06
52.8
48
41.7
Pp3c1_24550
Physcomitrella patens
9.1e-06
52.8
58
37.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (5 genes)
Drosophila melanogaster (3 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (10 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing