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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G60580
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G60580
Arabidopsis thaliana
1.3e-259
896.7
495
100.0
AT3G09760
Arabidopsis thaliana
1.7e-91
338.2
400
51.0
AT5G03180
Arabidopsis thaliana
3.6e-73
277.3
371
48.2
Pp3c9_8350
Physcomitrella patens
1.6e-65
251.9
339
48.4
Pp3c18_12020
Physcomitrella patens
1.8e-56
221.9
410
40.2
Pp3c21_17420
Physcomitrella patens
3.4e-55
217.6
339
42.5
AT3G06330
Arabidopsis thaliana
1.8e-48
195.3
452
35.0
AT5G18760
Arabidopsis thaliana
2.5e-42
174.9
353
36.5
Pp3c24_6532
Physcomitrella patens
1.2e-12
76.3
132
34.8
Pp3c8_14550
Physcomitrella patens
2.7e-12
75.1
87
37.9
Pp3c20_7770
Physcomitrella patens
1.4e-11
72.8
147
30.6
AT2G37950
Arabidopsis thaliana
2.0e-10
68.9
87
39.1
Cre02.g102600
Chlamydomonas reinhardtii
9.7e-10
66.6
66
42.4
AT5G05830
Arabidopsis thaliana
2.2e-09
65.5
124
37.1
AT5G01070
Arabidopsis thaliana
5.3e-08
60.8
88
38.6
AT4G34100
Arabidopsis thaliana
1.0e-06
56.6
82
35.4
AT2G34200
Arabidopsis thaliana
1.3e-06
56.2
74
36.5
AT5G59000
Arabidopsis thaliana
2.9e-06
55.1
87
33.3
Pp3c9_21140
Physcomitrella patens
5.0e-06
54.3
56
42.9
AT5G38070
Arabidopsis thaliana
6.5e-06
53.9
107
31.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (12 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (7 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing