Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G53500
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G53500
Arabidopsis thaliana
0.0e+00
1212.2
655
100.0
AT5G24320
Arabidopsis thaliana
4.8e-158
559.7
704
47.4
AT5G42010
Arabidopsis thaliana
2.4e-109
397.9
513
43.9
AT1G64610
Arabidopsis thaliana
8.7e-107
389.4
679
42.1
AT5G54200
Arabidopsis thaliana
2.1e-89
331.6
587
38.3
AT3G15470
Arabidopsis thaliana
5.1e-83
310.5
512
41.4
Pp3c12_17730
Physcomitrella patens
1.5e-71
272.3
592
34.5
AT1G48870
Arabidopsis thaliana
3.8e-70
267.7
482
36.7
Pp3c3_26050
Physcomitrella patens
3.2e-69
264.6
437
37.3
Pp3c4_14370
Physcomitrella patens
5.5e-69
263.8
596
33.2
AT2G37670
Arabidopsis thaliana
3.3e-66
254.6
547
36.7
AT5G02430
Arabidopsis thaliana
2.8e-65
251.5
516
36.4
Pp3c10_15710
Physcomitrella patens
1.4e-64
249.2
510
34.1
Pp3c3_18790
Physcomitrella patens
4.2e-61
237.7
458
33.8
FBgn0083969
Drosophila melanogaster
2.9e-38
161.8
387
32.3
ENSG00000131725
Homo sapiens
1.6e-36
156.0
352
31.0
gsu66850
Galdieria sulphuraria
5.2e-35
151.0
355
27.9
WBGene00006369
Caenorhabditis elegans
3.7e-33
144.8
357
27.5
gsu04410
Galdieria sulphuraria
1.4e-32
142.9
529
24.2
gsu04430
Galdieria sulphuraria
1.4e-32
142.9
529
24.2
gsu104770
Galdieria sulphuraria
3.2e-32
141.7
529
24.0
SPAC3H5.08c
Schizosaccharomyces pombe
4.5e-31
137.9
446
30.5
SPBC18H10.05
Schizosaccharomyces pombe
2.5e-29
132.1
316
27.5
YMR102C
Saccharomyces cerevisiae strain S288C
1.2e-26
123.2
411
26.8
ccr128400
Chondrus crispus
2.0e-26
122.5
350
30.6
tps54620
Thalassiosira pseudonana
4.4e-26
121.3
546
24.4
Naga_100124g3
Nannochloropsis gaditana
7.5e-26
120.6
516
28.3
CC00G82030
Cyclotella cryptica
1.3e-25
119.8
366
26.2
CC00G152500
Cyclotella cryptica
1.3e-25
119.8
366
26.2
CM01G01250
Cyanidioschyzon merolae
1.3e-22
109.8
419
27.4
Ec-02_006100
Ectocarpus siliculosus
1.1e-21
106.7
497
21.9
tho237360
Thalassiosira oceanica
1.5e-21
106.3
469
21.7
Cre06.g276100
Chlamydomonas reinhardtii
8.9e-19
97.1
440
20.9
YKL121W
Saccharomyces cerevisiae strain S288C
6.4e-17
90.9
371
26.1
Ec-12_005860
Ectocarpus siliculosus
1.5e-13
79.7
457
24.7
Ec-02_002470
Ectocarpus siliculosus
1.1e-11
73.6
266
25.2
Pp3c15_21840
Physcomitrella patens
4.9e-09
64.7
291
22.7
ENSG00000159259
Homo sapiens
3.2e-08
62.0
203
25.1
CM17G02210
Cyanidioschyzon merolae
6.0e-07
57.8
172
26.7
Pp3c21_5350
Physcomitrella patens
1.3e-06
56.6
60
45.0
pte700920
Paramecium tetraurelia
5.1e-06
54.7
171
24.6
pte734700
Paramecium tetraurelia
5.1e-06
54.7
171
24.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (3 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (9 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (4 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (7 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing