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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G39840
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G39840
Arabidopsis thaliana
0.0e+00
1559.7
777
100.0
Pp3c11_24680
Physcomitrella patens
1.1e-220
768.1
618
59.9
gsu141650
Galdieria sulphuraria
4.7e-128
460.3
548
43.2
ENSG00000156502
Homo sapiens
1.3e-120
435.6
502
45.4
sya00G151810
Synedra acus
9.9e-118
426.0
543
40.5
ps00G135460
Pseudo-nitzschia multiseries
1.7e-117
425.2
513
45.0
Ec-11_000550
Ectocarpus siliculosus
3.0e-114
414.5
537
41.3
gsu110850
Galdieria sulphuraria
3.9e-114
414.1
521
40.3
AT4G14790
Arabidopsis thaliana
3.3e-113
411.0
480
43.1
Naga_100445g1
Nannochloropsis gaditana
5.6e-113
410.2
555
38.7
PSNMU-V1.4_AUG-EV-PASAV3_0048960
Pseudo-nitzschia multistriata
7.4e-113
409.8
532
42.5
AA0012G01140
Aureococcus anophagefferens
1.6e-112
408.7
476
46.0
FBgn0037232
Drosophila melanogaster
1.1e-111
406.0
621
38.6
tps94420
Thalassiosira pseudonana
1.4e-111
405.6
505
41.8
Sro345_g122490
Seminavis robusta
9.0e-111
402.9
484
42.6
CC00G47930
Cyclotella cryptica
1.4e-108
395.6
520
40.8
gene1104
Fragilariopsis cylindrus
7.9e-107
389.8
548
38.9
tho295100
Thalassiosira oceanica
2.5e-105
384.8
358
50.3
WBGene00007444
Caenorhabditis elegans
3.3e-105
384.4
514
39.7
ptri190020
Phaeodactylum tricornutum
9.6e-105
382.9
508
40.0
gene8944
Fragilariopsis cylindrus
5.7e-97
357.1
322
53.1
SPAC637.11
Schizosaccharomyces pombe
8.5e-93
343.2
470
38.9
CM16G01410
Cyanidioschyzon merolae
3.0e-90
334.7
656
33.4
Naga_100019g77
Nannochloropsis gaditana
2.0e-89
332.0
514
37.5
YPL029W
Saccharomyces cerevisiae strain S288C
2.2e-88
328.6
501
39.1
Cre06.g270900
Chlamydomonas reinhardtii
6.5e-61
237.3
609
28.9
sya00G127370
Synedra acus
3.5e-30
135.2
289
32.5
AA0016G01420
Aureococcus anophagefferens
3.9e-29
131.7
308
32.8
ps00G40990
Pseudo-nitzschia multiseries
1.9e-28
129.4
291
33.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing