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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G25560
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G25560
Arabidopsis thaliana
6.4e-183
641.3
329
100.0
AT5G22920
Arabidopsis thaliana
7.0e-73
275.8
221
64.3
Pp3c2_31820
Physcomitrella patens
4.6e-72
273.1
220
66.4
Pp3c1_6070
Physcomitrella patens
2.8e-69
263.8
220
62.3
Pp3c10_4820
Physcomitrella patens
8.0e-69
262.3
227
62.6
Pp3c11_6970
Physcomitrella patens
1.0e-68
261.9
220
64.1
Pp3c14_5600
Physcomitrella patens
5.8e-67
256.1
217
65.4
AT3G62970
Arabidopsis thaliana
2.7e-56
220.7
234
53.8
AT5G18650
Arabidopsis thaliana
3.0e-55
217.2
227
54.2
Cre17.g718300
Chlamydomonas reinhardtii
1.5e-54
214.9
247
51.4
AT1G18910
Arabidopsis thaliana
1.7e-34
148.3
213
38.5
AT1G74770
Arabidopsis thaliana
3.8e-34
147.1
267
31.5
ENSG00000163743
Homo sapiens
8.4e-34
146.0
205
34.6
Cre05.g248550
Chlamydomonas reinhardtii
7.1e-33
142.9
213
39.9
AT3G18290
Arabidopsis thaliana
9.3e-33
142.5
214
34.6
Naga_100090g9
Nannochloropsis gaditana
1.2e-32
142.1
231
35.9
Pp3c25_14501
Physcomitrella patens
3.5e-32
140.6
214
43.9
Pp3c25_14500
Physcomitrella patens
3.5e-32
140.6
214
43.9
Pp3c6_1960
Physcomitrella patens
1.7e-31
138.3
241
40.2
SPAC2F3.16
Schizosaccharomyces pombe
1.9e-30
134.8
235
33.6
Sro968_g226070
Seminavis robusta
2.5e-30
134.4
210
32.9
ccr161060
Chondrus crispus
2.8e-29
131.0
222
32.4
CM13G01410
Cyanidioschyzon merolae
3.6e-29
130.6
212
37.3
ps00G33510
Pseudo-nitzschia multiseries
4.8e-29
130.2
215
33.0
sya00G161050
Synedra acus
6.2e-29
129.8
210
32.4
ccr65580
Chondrus crispus
1.1e-28
129.0
212
28.3
Sro99_g050950
Seminavis robusta
1.1e-28
129.0
210
32.4
Ec-26_004520
Ectocarpus siliculosus
1.8e-28
128.3
227
35.2
tho87860
Thalassiosira oceanica
2.4e-28
127.9
239
35.6
ptri130290
Phaeodactylum tricornutum
4.0e-28
127.1
210
31.4
gsu76240
Galdieria sulphuraria
6.9e-28
126.3
253
33.2
gene16313
Fragilariopsis cylindrus
1.2e-27
125.6
210
31.9
fso160310
Fistulifera solaris
5.8e-27
123.2
206
34.5
fso155640
Fistulifera solaris
1.3e-26
122.1
213
30.5
fso77080
Fistulifera solaris
1.7e-26
121.7
206
32.0
CC00G86210
Cyclotella cryptica
2.2e-26
121.3
212
29.2
fso77050
Fistulifera solaris
2.9e-26
120.9
210
34.3
fso191720
Fistulifera solaris
2.9e-26
120.9
210
34.3
pte243060
Paramecium tetraurelia
4.9e-26
120.2
222
39.2
sya00G162130
Synedra acus
8.4e-26
119.4
221
30.3
tho217020
Thalassiosira oceanica
1.1e-25
119.0
239
33.5
ps00G05920
Pseudo-nitzschia multiseries
7.1e-25
116.3
218
39.0
tps142420
Thalassiosira pseudonana
1.6e-24
115.2
227
36.6
Sro70_g039030
Seminavis robusta
4.6e-24
113.6
240
34.2
ptri72160
Phaeodactylum tricornutum
6.0e-24
113.2
240
34.6
sya00G196410
Synedra acus
6.0e-24
113.2
242
32.6
tps193950
Thalassiosira pseudonana
1.3e-23
112.1
207
36.2
fso150310
Fistulifera solaris
2.3e-23
111.3
193
31.1
fso73640
Fistulifera solaris
3.9e-23
110.5
294
32.7
ps00G65070
Pseudo-nitzschia multiseries
3.9e-23
110.5
249
32.5
ccr36960
Chondrus crispus
5.1e-23
110.2
219
34.2
pte760660
Paramecium tetraurelia
6.7e-23
109.8
188
44.7
fso199510
Fistulifera solaris
1.5e-22
108.6
296
32.4
tps130000
Thalassiosira pseudonana
1.9e-22
108.2
216
28.7
pte443830
Paramecium tetraurelia
1.6e-21
105.1
217
41.0
gene18213
Fragilariopsis cylindrus
8.1e-21
102.8
243
32.5
tps146910
Thalassiosira pseudonana
1.4e-20
102.1
176
27.8
CC00G149660
Cyclotella cryptica
1.8e-20
101.7
269
30.1
ptri69840
Phaeodactylum tricornutum
2.4e-20
101.3
301
29.6
fso43770
Fistulifera solaris
2.6e-19
97.8
244
30.7
fso64760
Fistulifera solaris
2.6e-19
97.8
244
30.7
Sro695_g188680
Seminavis robusta
6.5e-18
93.2
225
33.8
CC00G122160
Cyclotella cryptica
6.0e-16
86.7
170
34.7
gene11141
Fragilariopsis cylindrus
9.6e-14
79.3
139
45.3
sya00G00440
Synedra acus
3.2e-09
64.3
90
35.6
Sro345_g122370
Seminavis robusta
2.5e-06
54.7
91
33.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (4 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (10 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (3 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (5 genes)
Synedra acus (4 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing