Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT4G32880
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT4G32880
Arabidopsis thaliana
0.0e+00
1677.1
834
100.0
AT1G52150
Arabidopsis thaliana
0.0e+00
1248.8
835
76.2
AT2G34710
Arabidopsis thaliana
1.3e-309
1063.5
838
64.8
AT5G60690
Arabidopsis thaliana
1.7e-293
1010.0
848
61.9
AT1G30490
Arabidopsis thaliana
1.0e-290
1000.7
838
62.1
Pp3c16_15450
Physcomitrella patens
2.2e-272
939.9
842
58.1
Pp3c12_14370
Physcomitrella patens
7.6e-265
914.8
877
54.7
Pp3c4_5300
Physcomitrella patens
1.9e-263
910.2
875
54.5
Pp3c10_19630
Physcomitrella patens
4.0e-250
865.9
873
52.6
Pp3c3_30010
Physcomitrella patens
3.0e-221
770.0
746
56.3
Pp3c14_15980
Physcomitrella patens
2.4e-24
115.9
745
22.7
Pp3c2_10790
Physcomitrella patens
1.5e-23
113.2
757
21.5
Pp3c17_16910
Physcomitrella patens
3.4e-23
112.1
749
22.2
AT4G04890
Arabidopsis thaliana
3.2e-21
105.5
754
22.5
AT1G79840
Arabidopsis thaliana
7.1e-13
77.8
638
21.3
AT1G73360
Arabidopsis thaliana
8.7e-11
70.9
557
22.1
AT5G52170
Arabidopsis thaliana
1.4e-08
63.5
491
21.2
AT1G17920
Arabidopsis thaliana
2.6e-07
59.3
248
24.2
AT3G03260
Arabidopsis thaliana
3.4e-07
58.9
108
35.2
AT4G00730
Arabidopsis thaliana
3.4e-07
58.9
744
20.3
AT2G32370
Arabidopsis thaliana
5.8e-07
58.2
541
20.1
AT5G17320
Arabidopsis thaliana
5.8e-07
58.2
105
33.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (14 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing