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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT4G31210
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT4G31210
Arabidopsis thaliana
0.0e+00
2478.0
1285
100.0
Pp3c24_9990
Physcomitrella patens
7.9e-229
795.8
813
49.9
Pp3c23_11430
Physcomitrella patens
1.1e-227
792.0
824
49.6
sya00G29290
Synedra acus
1.6e-144
515.8
833
38.1
Cre10.g442850
Chlamydomonas reinhardtii
8.4e-138
493.4
1046
33.3
sya00G104520
Synedra acus
1.5e-99
366.3
460
44.1
ccr175460
Chondrus crispus
3.4e-91
338.6
877
31.8
CM09G02520
Cyanidioschyzon merolae
1.3e-85
320.1
858
30.9
gsu112890
Galdieria sulphuraria
1.4e-84
316.6
866
31.3
fso04930
Fistulifera solaris
5.3e-76
288.1
919
28.5
fso103990
Fistulifera solaris
5.9e-75
284.6
922
28.1
emh313960
Emiliania huxleyi
6.5e-74
281.2
899
27.4
ptri21820
Phaeodactylum tricornutum
1.2e-72
276.9
938
28.3
Ec-08_003340
Ectocarpus siliculosus
2.1e-64
249.6
795
27.8
PSNMU-V1.4_AUG-EV-PASAV3_0106300
Pseudo-nitzschia multistriata
4.7e-64
248.4
966
26.3
Sro843_g209820
Seminavis robusta
7.5e-62
241.1
925
28.5
gene17974
Fragilariopsis cylindrus
1.7e-61
240.0
973
25.5
ps00G39310
Pseudo-nitzschia multiseries
7.0e-60
234.6
552
32.1
Naga_100077g2
Nannochloropsis gaditana
7.3e-33
144.8
214
40.2
Pp3s46_350
Physcomitrella patens
4.3e-25
119.0
630
24.9
FBgn0040268
Drosophila melanogaster
3.8e-21
105.9
612
22.5
AT5G63920
Arabidopsis thaliana
3.9e-18
95.9
617
22.2
YLR234W
Saccharomyces cerevisiae strain S288C
3.9e-18
95.9
575
23.8
ENSG00000177302
Homo sapiens
1.1e-17
94.4
607
23.1
AA0002G05710
Aureococcus anophagefferens
2.5e-17
93.2
556
23.7
ENSG00000100038
Homo sapiens
4.3e-17
92.4
470
22.8
Naga_100077g1
Nannochloropsis gaditana
2.4e-15
86.7
231
28.1
Naga_100172g6
Nannochloropsis gaditana
4.0e-15
85.9
531
22.2
Ec-03_001530
Ectocarpus siliculosus
9.0e-15
84.7
556
21.8
Pp3c21_9710
Physcomitrella patens
1.2e-14
84.3
628
22.6
gsu79390
Galdieria sulphuraria
2.6e-14
83.2
556
24.8
WBGene00012995
Caenorhabditis elegans
9.3e-12
74.7
514
22.2
AA0002G02200
Aureococcus anophagefferens
2.7e-11
73.2
498
23.5
fso51890
Fistulifera solaris
1.3e-10
70.9
590
20.5
Pp3c8_22620
Physcomitrella patens
2.5e-09
66.6
521
21.3
fso06640
Fistulifera solaris
3.3e-09
66.2
590
20.3
CM07G00560
Cyanidioschyzon merolae
4.8e-08
62.4
378
24.3
pte753160
Paramecium tetraurelia
9.9e-06
54.7
568
19.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing