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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G55850
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G55850
Arabidopsis thaliana
0.0e+00
1171.4
584
100.0
Pp3c20_1490
Physcomitrella patens
5.3e-140
499.6
537
47.9
Cre06.g279350
Chlamydomonas reinhardtii
1.9e-73
278.5
475
36.2
sya00G51490
Synedra acus
2.1e-64
248.4
494
33.0
Pp3s32_630
Physcomitrella patens
2.4e-55
218.4
545
31.6
AA0007G01200
Aureococcus anophagefferens
1.1e-52
209.5
513
32.0
Cre07.g313350
Chlamydomonas reinhardtii
4.9e-45
184.1
531
28.1
Naga_100004g126
Nannochloropsis gaditana
2.7e-43
178.3
507
28.0
Ec-06_001910
Ectocarpus siliculosus
3.9e-34
147.9
573
27.1
gsu99780
Galdieria sulphuraria
4.3e-33
144.4
438
27.4
emh678210
Emiliania huxleyi
2.8e-32
141.7
412
29.6
Sro944_g223010
Seminavis robusta
4.8e-32
141.0
580
24.3
Sro56_g032620
Seminavis robusta
9.0e-31
136.7
575
25.0
pte268050
Paramecium tetraurelia
2.2e-29
132.1
582
21.0
Sro269_g104070
Seminavis robusta
3.0e-26
121.7
564
22.9
Sro1872_g302810
Seminavis robusta
3.9e-26
121.3
583
22.8
Sro1227_g254330
Seminavis robusta
6.7e-18
94.0
224
29.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (5 genes)
Synedra acus (1 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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