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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G48740
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G48740
Arabidopsis thaliana
1.6e-158
560.1
290
100.0
AT5G23660
Arabidopsis thaliana
8.8e-128
458.0
292
83.9
AT5G50800
Arabidopsis thaliana
3.6e-81
303.1
242
65.7
AT4G25010
Arabidopsis thaliana
2.2e-78
293.9
255
60.8
AT5G13170
Arabidopsis thaliana
5.3e-64
246.1
212
59.4
AT2G39060
Arabidopsis thaliana
1.6e-60
234.6
240
49.2
AT5G50790
Arabidopsis thaliana
3.5e-60
233.4
239
51.5
AT4G15920
Arabidopsis thaliana
2.2e-38
161.0
209
39.7
AT3G16690
Arabidopsis thaliana
4.3e-34
146.7
206
38.3
AT5G62850
Arabidopsis thaliana
4.3e-34
146.7
207
37.2
Pp3c27_4170
Physcomitrella patens
6.9e-32
139.4
223
38.1
AT1G21460
Arabidopsis thaliana
9.0e-32
139.0
220
40.0
Pp3c6_15559
Physcomitrella patens
9.0e-32
139.0
235
36.6
AT3G28007
Arabidopsis thaliana
1.7e-30
134.8
245
35.5
AT4G10850
Arabidopsis thaliana
1.7e-30
134.8
219
36.5
Pp3c11_2580
Physcomitrella patens
2.5e-29
131.0
205
38.5
AT5G40260
Arabidopsis thaliana
9.4e-29
129.0
227
37.4
Pp3c16_4240
Physcomitrella patens
4.3e-26
120.2
201
38.3
AT1G66770
Arabidopsis thaliana
2.2e-25
117.9
246
32.1
AT3G14770
Arabidopsis thaliana
2.2e-25
117.9
204
36.3
Pp3c6_17210
Physcomitrella patens
6.3e-25
116.3
228
35.1
AT5G53190
Arabidopsis thaliana
1.9e-21
104.8
207
33.8
Pp3c10_2460
Physcomitrella patens
2.5e-21
104.4
189
33.3
ptri234710
Phaeodactylum tricornutum
1.5e-15
85.1
207
30.4
gene1518
Fragilariopsis cylindrus
1.7e-14
81.6
208
29.8
Cre06.g275000
Chlamydomonas reinhardtii
2.2e-14
81.3
215
28.8
Sro1149_g246590
Seminavis robusta
3.8e-14
80.5
207
26.6
Sro435_g142390
Seminavis robusta
4.2e-13
77.0
214
26.6
WBGene00012647
Caenorhabditis elegans
1.2e-12
75.5
201
25.4
ps00G175090
Pseudo-nitzschia multiseries
1.2e-12
75.5
223
28.7
sya00G160630
Synedra acus
2.1e-12
74.7
203
28.6
AA0002G06420
Aureococcus anophagefferens
2.7e-12
74.3
209
27.3
Sro1579_g283730
Seminavis robusta
6.1e-12
73.2
208
26.0
sya00G177190
Synedra acus
1.8e-11
71.6
203
27.6
FBgn0025469
Drosophila melanogaster
3.0e-11
70.9
211
26.5
AA0008G03470
Aureococcus anophagefferens
3.9e-11
70.5
211
30.8
WBGene00007384
Caenorhabditis elegans
5.2e-11
70.1
208
28.4
sya00G65200
Synedra acus
5.2e-11
70.1
180
28.3
Cre06.g271800
Chlamydomonas reinhardtii
2.0e-10
68.2
200
28.0
Cre07.g340700
Chlamydomonas reinhardtii
1.1e-08
62.4
203
23.6
emh526360
Emiliania huxleyi
1.1e-08
62.4
212
29.2
Pp3c10_2470
Physcomitrella patens
1.4e-08
62.0
81
34.6
fso11760
Fistulifera solaris
2.0e-07
58.2
139
32.4
fso113620
Fistulifera solaris
2.6e-07
57.8
122
36.9
gsu06470
Galdieria sulphuraria
7.7e-07
56.2
214
25.2
tps111300
Thalassiosira pseudonana
1.3e-06
55.5
199
23.1
Ec-12_004940
Ectocarpus siliculosus
2.2e-06
54.7
83
37.3
gene13247
Fragilariopsis cylindrus
2.2e-06
54.7
230
24.3
emh716820
Emiliania huxleyi
2.9e-06
54.3
201
26.9
emh104930
Emiliania huxleyi
2.9e-06
54.3
201
26.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (17 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (3 genes)
Synedra acus (3 genes)
Physcomitrella patens (7 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing