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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G28080
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G28080
Arabidopsis thaliana
1.3e-192
673.7
359
100.0
AT3G28070
Arabidopsis thaliana
1.5e-164
580.5
359
85.5
AT3G28100
Arabidopsis thaliana
1.7e-160
567.0
353
85.0
AT3G28130
Arabidopsis thaliana
1.6e-123
444.1
356
67.4
AT5G40210
Arabidopsis thaliana
2.4e-90
334.0
347
52.7
AT3G28050
Arabidopsis thaliana
4.1e-82
306.6
366
50.0
AT5G40230
Arabidopsis thaliana
3.2e-71
270.4
351
45.9
AT5G40240
Arabidopsis thaliana
1.2e-70
268.5
345
45.5
AT4G15540
Arabidopsis thaliana
2.0e-68
261.2
351
43.6
AT2G39510
Arabidopsis thaliana
2.0e-36
154.8
327
31.5
AT4G08290
Arabidopsis thaliana
2.0e-36
154.8
350
31.4
AT5G64700
Arabidopsis thaliana
3.4e-36
154.1
324
30.9
AT5G07050
Arabidopsis thaliana
4.9e-35
150.2
330
30.3
AT1G43650
Arabidopsis thaliana
3.1e-34
147.5
321
30.8
AT2G37460
Arabidopsis thaliana
1.2e-33
145.6
346
30.1
AT1G21890
Arabidopsis thaliana
1.6e-33
145.2
332
29.5
AT1G75500
Arabidopsis thaliana
1.6e-33
145.2
350
28.3
AT1G09380
Arabidopsis thaliana
5.9e-33
143.3
329
29.2
AT1G70260
Arabidopsis thaliana
5.9e-33
143.3
375
29.6
AT5G13670
Arabidopsis thaliana
1.1e-31
139.0
324
27.2
AT2G37450
Arabidopsis thaliana
4.3e-31
137.1
328
30.2
AT3G18200
Arabidopsis thaliana
9.5e-31
136.0
341
31.7
AT3G28060
Arabidopsis thaliana
9.5e-31
136.0
135
48.9
AT2G40900
Arabidopsis thaliana
4.7e-30
133.7
322
28.9
AT1G44800
Arabidopsis thaliana
1.0e-29
132.5
332
28.0
AT1G68170
Arabidopsis thaliana
1.4e-29
132.1
339
29.2
AT3G30340
Arabidopsis thaliana
1.4e-29
132.1
349
28.9
AT4G08300
Arabidopsis thaliana
2.3e-29
131.3
348
28.4
AT3G53210
Arabidopsis thaliana
6.8e-29
129.8
329
29.5
AT1G60050
Arabidopsis thaliana
2.6e-28
127.9
372
29.0
AT4G30420
Arabidopsis thaliana
1.7e-27
125.2
323
27.6
AT4G01430
Arabidopsis thaliana
3.7e-27
124.0
320
27.2
AT3G56620
Arabidopsis thaliana
1.4e-26
122.1
329
28.0
AT4G28040
Arabidopsis thaliana
5.4e-26
120.2
325
27.4
Pp3c10_24460
Physcomitrella patens
2.3e-24
114.8
340
26.8
AT4G01450
Arabidopsis thaliana
6.6e-24
113.2
308
25.3
Pp3c23_13280
Physcomitrella patens
3.3e-23
110.9
346
25.1
AT5G45370
Arabidopsis thaliana
5.6e-23
110.2
326
28.8
Pp3c5_11100
Physcomitrella patens
5.6e-23
110.2
358
28.2
Pp3c12_19870
Physcomitrella patens
9.5e-23
109.4
347
25.4
Pp3c20_20860
Physcomitrella patens
1.2e-22
109.0
339
24.2
AT1G11460
Arabidopsis thaliana
4.7e-22
107.1
319
25.7
AT1G01070
Arabidopsis thaliana
8.0e-22
106.3
331
24.5
Pp3c4_21140
Physcomitrella patens
8.0e-22
106.3
341
27.0
AT4G01440
Arabidopsis thaliana
1.4e-21
105.5
317
24.9
AT1G11450
Arabidopsis thaliana
2.3e-21
104.8
296
26.4
AT1G25270
Arabidopsis thaliana
3.1e-21
104.4
325
26.8
AT4G19185
Arabidopsis thaliana
3.1e-21
104.4
374
25.7
AT3G45870
Arabidopsis thaliana
4.0e-21
104.0
353
26.9
Pp3c12_8230
Physcomitrella patens
2.0e-20
101.7
368
27.4
AT5G47470
Arabidopsis thaliana
1.7e-19
98.6
346
24.6
Pp3c4_12350
Physcomitrella patens
5.0e-16
87.0
338
25.4
AT4G16620
Arabidopsis thaliana
8.9e-13
76.3
345
23.2
AT4G24980
Arabidopsis thaliana
2.6e-12
74.7
237
24.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (46 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing