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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G28050
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G28050
Arabidopsis thaliana
6.6e-205
714.5
368
100.0
AT5G40240
Arabidopsis thaliana
6.0e-89
329.3
333
52.0
AT5G40230
Arabidopsis thaliana
2.4e-85
317.4
372
46.2
AT3G28080
Arabidopsis thaliana
1.7e-83
311.2
366
50.0
AT3G28100
Arabidopsis thaliana
1.7e-83
311.2
327
51.4
AT3G28070
Arabidopsis thaliana
4.2e-82
306.6
366
48.4
AT4G15540
Arabidopsis thaliana
2.1e-81
304.3
323
47.4
AT3G28130
Arabidopsis thaliana
2.7e-81
303.9
326
50.9
AT5G40210
Arabidopsis thaliana
6.9e-77
289.3
351
47.0
AT1G70260
Arabidopsis thaliana
5.0e-51
203.4
352
35.5
AT1G21890
Arabidopsis thaliana
2.0e-44
181.4
340
33.8
AT2G39510
Arabidopsis thaliana
7.2e-42
172.9
321
33.0
AT1G60050
Arabidopsis thaliana
3.9e-40
167.2
363
32.2
AT5G07050
Arabidopsis thaliana
8.8e-40
166.0
364
29.1
AT3G18200
Arabidopsis thaliana
1.5e-39
165.2
351
31.6
AT4G28040
Arabidopsis thaliana
3.3e-39
164.1
340
32.9
AT3G53210
Arabidopsis thaliana
2.8e-38
161.0
324
33.0
AT2G37460
Arabidopsis thaliana
4.8e-38
160.2
318
31.4
AT4G30420
Arabidopsis thaliana
1.4e-37
158.7
368
27.4
AT1G09380
Arabidopsis thaliana
2.4e-37
157.9
333
28.8
AT1G44800
Arabidopsis thaliana
3.1e-37
157.5
359
29.0
AT4G08300
Arabidopsis thaliana
5.3e-37
156.8
330
29.7
AT5G13670
Arabidopsis thaliana
1.5e-36
155.2
323
30.7
AT2G37450
Arabidopsis thaliana
3.8e-35
150.6
321
30.2
AT1G43650
Arabidopsis thaliana
6.5e-35
149.8
335
29.0
AT4G08290
Arabidopsis thaliana
6.5e-35
149.8
367
27.8
AT1G68170
Arabidopsis thaliana
1.1e-34
149.1
343
29.7
AT3G30340
Arabidopsis thaliana
1.1e-34
149.1
345
30.7
AT1G01070
Arabidopsis thaliana
1.9e-34
148.3
357
28.3
AT1G11460
Arabidopsis thaliana
3.2e-34
147.5
322
28.9
AT1G75500
Arabidopsis thaliana
3.2e-34
147.5
327
30.0
AT4G01430
Arabidopsis thaliana
3.2e-34
147.5
362
26.2
AT5G64700
Arabidopsis thaliana
1.6e-33
145.2
348
27.3
AT5G45370
Arabidopsis thaliana
2.1e-33
144.8
356
31.2
Pp3c4_21140
Physcomitrella patens
3.0e-32
141.0
334
29.6
AT2G40900
Arabidopsis thaliana
5.2e-32
140.2
353
28.3
AT4G01440
Arabidopsis thaliana
5.2e-32
140.2
326
26.7
AT1G11450
Arabidopsis thaliana
1.7e-30
135.2
282
29.1
AT4G01450
Arabidopsis thaliana
2.2e-30
134.8
320
25.9
AT3G56620
Arabidopsis thaliana
3.7e-30
134.0
333
27.3
Pp3c12_8230
Physcomitrella patens
8.2e-30
132.9
334
29.3
AT4G19185
Arabidopsis thaliana
5.3e-29
130.2
337
28.8
AT3G45870
Arabidopsis thaliana
9.1e-29
129.4
329
28.0
Pp3c10_24460
Physcomitrella patens
1.3e-27
125.6
332
27.7
AT3G28060
Arabidopsis thaliana
2.5e-26
121.3
129
48.8
Pp3c20_20860
Physcomitrella patens
1.2e-25
119.0
337
26.1
AT1G25270
Arabidopsis thaliana
3.0e-24
114.4
347
26.5
Pp3c4_12350
Physcomitrella patens
4.0e-24
114.0
324
26.5
Pp3c12_19870
Physcomitrella patens
2.0e-23
111.7
366
26.2
Pp3c5_11100
Physcomitrella patens
2.0e-23
111.7
371
24.8
Pp3c23_13280
Physcomitrella patens
4.8e-22
107.1
334
24.9
AT5G47470
Arabidopsis thaliana
2.7e-20
101.3
328
24.1
AT4G16620
Arabidopsis thaliana
8.5e-19
96.3
309
25.6
AT4G24980
Arabidopsis thaliana
4.8e-14
80.5
254
26.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (46 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing