Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G25900
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G25900
Arabidopsis thaliana
1.6e-189
663.3
327
100.0
Pp3c8_6230
Physcomitrella patens
8.7e-108
391.7
326
58.9
AT3G22740
Arabidopsis thaliana
7.4e-107
388.7
329
56.2
Pp3c23_9570
Physcomitrella patens
8.2e-106
385.2
323
60.7
Pp3c24_8340
Physcomitrella patens
1.1e-105
384.8
326
60.1
AT3G63250
Arabidopsis thaliana
5.0e-103
375.9
322
55.9
gsu85930
Galdieria sulphuraria
4.9e-58
226.5
308
42.2
FBgn0032727
Drosophila melanogaster
1.4e-49
198.4
310
32.9
FBgn0032726
Drosophila melanogaster
7.0e-49
196.1
318
35.5
Naga_100017g12
Nannochloropsis gaditana
6.2e-45
183.0
470
29.4
Ec-11_005000
Ectocarpus siliculosus
7.5e-35
149.4
240
37.9
Cre10.g455650
Chlamydomonas reinhardtii
4.9e-34
146.7
416
27.9
Sro333_g119570
Seminavis robusta
4.1e-33
143.7
255
33.7
fso119850
Fistulifera solaris
2.3e-31
137.9
302
31.1
fso120550
Fistulifera solaris
2.5e-30
134.4
304
32.2
sya00G253300
Synedra acus
4.3e-30
133.7
316
30.7
emh704200
Emiliania huxleyi
4.7e-29
130.2
332
31.3
gene14551
Fragilariopsis cylindrus
8.9e-28
125.9
397
25.7
YLL062C
Saccharomyces cerevisiae strain S288C
1.5e-27
125.2
344
29.7
CM15G03080
Cyanidioschyzon merolae
6.4e-26
119.8
413
28.6
ptri40280
Phaeodactylum tricornutum
8.4e-26
119.4
370
27.3
YPL273W
Saccharomyces cerevisiae strain S288C
1.9e-25
118.2
329
28.6
PSNMU-V1.4_AUG-EV-PASAV3_0087470
Pseudo-nitzschia multistriata
5.4e-25
116.7
230
33.5
Sro817_g206750
Seminavis robusta
1.6e-21
105.1
312
25.0
WBGene00010988
Caenorhabditis elegans
2.7e-16
87.8
345
27.8
Sro127_g060970
Seminavis robusta
4.6e-16
87.0
364
25.3
ENSG00000116984
Homo sapiens
6.0e-16
86.7
328
26.5
Cre06.g250902
Chlamydomonas reinhardtii
7.8e-16
86.3
288
27.4
Naga_100122g16
Nannochloropsis gaditana
3.9e-15
84.0
288
26.0
ccr189360
Chondrus crispus
1.5e-14
82.0
289
26.0
Pp3s169_110
Physcomitrella patens
7.3e-14
79.7
287
26.5
ptri62020
Phaeodactylum tricornutum
9.6e-14
79.3
325
22.5
CC00G192060
Cyclotella cryptica
1.3e-13
79.0
348
23.9
ps00G142690
Pseudo-nitzschia multiseries
1.6e-13
78.6
283
28.3
ENSG00000145692
Homo sapiens
2.8e-13
77.8
340
25.0
Ec-06_000970
Ectocarpus siliculosus
4.8e-13
77.0
283
24.4
tho497960
Thalassiosira oceanica
6.2e-13
76.6
357
21.6
emh415780
Emiliania huxleyi
1.1e-12
75.9
288
26.0
ENSG00000132840
Homo sapiens
1.4e-12
75.5
340
23.8
PSNMU-V1.4_AUG-EV-PASAV3_0124760
Pseudo-nitzschia multistriata
1.4e-12
75.5
283
27.9
ptri31320
Phaeodactylum tricornutum
1.4e-12
75.5
289
26.0
tps07990
Thalassiosira pseudonana
6.9e-12
73.2
283
25.8
tho122520
Thalassiosira oceanica
1.5e-11
72.0
283
26.1
emh170490
Emiliania huxleyi
2.6e-11
71.2
288
25.3
fso193720
Fistulifera solaris
1.3e-10
68.9
336
24.4
YMR321C
Saccharomyces cerevisiae strain S288C
1.3e-10
68.9
100
38.0
Sro803_g204810
Seminavis robusta
1.3e-10
68.9
283
25.1
fso85450
Fistulifera solaris
2.9e-10
67.8
288
26.0
fso137380
Fistulifera solaris
2.9e-10
67.8
288
26.0
ps00G181230
Pseudo-nitzschia multiseries
3.8e-10
67.4
359
23.7
sya00G51530
Synedra acus
3.8e-10
67.4
294
25.9
sya00G238700
Synedra acus
8.4e-10
66.2
180
30.6
fso59990
Fistulifera solaris
1.1e-09
65.9
320
23.8
CC00G175510
Cyclotella cryptica
2.4e-09
64.7
184
28.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (3 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (3 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (4 genes)
Synedra acus (3 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing