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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G12680
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G12680
Arabidopsis thaliana
5.2e-280
964.5
525
100.0
Pp3c1_12940
Physcomitrella patens
1.7e-52
208.8
707
25.9
Pp3c2_24140
Physcomitrella patens
5.4e-43
177.2
635
23.5
AT5G63260
Arabidopsis thaliana
1.3e-20
102.8
358
31.6
Pp3c26_12400
Physcomitrella patens
8.7e-17
90.1
251
40.2
Naga_100100g23
Nannochloropsis gaditana
7.4e-16
87.0
287
37.3
AT2G47850
Arabidopsis thaliana
1.1e-14
83.2
307
35.2
AT3G02830
Arabidopsis thaliana
7.6e-13
77.0
292
37.0
AT5G16540
Arabidopsis thaliana
3.8e-12
74.7
252
40.1
Pp3c26_12270
Physcomitrella patens
1.2e-10
69.7
237
35.9
CC00G36780
Cyclotella cryptica
2.1e-10
68.9
176
46.6
ptri12290
Phaeodactylum tricornutum
7.9e-10
67.0
149
40.9
ptri32040
Phaeodactylum tricornutum
7.9e-10
67.0
149
40.9
AT3G48440
Arabidopsis thaliana
1.0e-09
66.6
303
28.4
tho37020
Thalassiosira oceanica
1.3e-09
66.2
150
52.0
Pp3c4_29750
Physcomitrella patens
3.9e-09
64.7
280
36.4
Sro151_g069330
Seminavis robusta
3.9e-09
64.7
198
25.8
AT3G06410
Arabidopsis thaliana
5.1e-09
64.3
59
45.8
tps49530
Thalassiosira pseudonana
5.1e-09
64.3
182
41.8
ps00G07450
Pseudo-nitzschia multiseries
8.7e-09
63.5
150
45.3
emh681970
Emiliania huxleyi
1.5e-08
62.8
126
27.8
emh225520
Emiliania huxleyi
1.5e-08
62.8
126
27.8
emh192020
Emiliania huxleyi
1.5e-08
62.8
126
27.8
emh191980
Emiliania huxleyi
1.5e-08
62.8
126
27.8
AT5G18550
Arabidopsis thaliana
5.7e-08
60.8
38
63.2
sya00G05840
Synedra acus
1.6e-07
59.3
199
36.7
fso152200
Fistulifera solaris
6.3e-07
57.4
141
41.1
AT2G32930
Arabidopsis thaliana
8.2e-07
57.0
309
27.2
gsu127700
Galdieria sulphuraria
6.9e-06
53.9
37
59.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (1 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (9 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (4 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing