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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G02660
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G02660
Arabidopsis thaliana
4.0e-293
1008.1
512
100.0
Pp3c3_3070
Physcomitrella patens
1.2e-164
581.3
491
60.9
Cre13.g606050
Chlamydomonas reinhardtii
2.6e-143
510.4
435
59.3
CM17G02750
Cyanidioschyzon merolae
2.0e-122
441.0
444
49.3
ccr107320
Chondrus crispus
2.6e-122
440.7
441
51.0
gsu108510
Galdieria sulphuraria
4.5e-119
429.9
441
50.3
Pp3s58_130
Physcomitrella patens
1.6e-84
315.1
429
40.6
FBgn0035064
Drosophila melanogaster
4.3e-77
290.4
405
39.5
CC00G170180
Cyclotella cryptica
1.2e-74
282.3
408
39.5
YPL097W
Saccharomyces cerevisiae strain S288C
4.9e-73
276.9
452
36.9
Ec-18_001870
Ectocarpus siliculosus
5.4e-72
273.5
465
36.6
PSNMU-V1.4_AUG-EV-PASAV3_0121980
Pseudo-nitzschia multistriata
9.3e-72
272.7
446
37.2
tho168500
Thalassiosira oceanica
1.2e-71
272.3
448
37.3
ps00G162750
Pseudo-nitzschia multiseries
2.1e-71
271.6
429
38.5
AA0055G00210
Aureococcus anophagefferens
3.5e-71
270.8
402
38.6
ptri134850
Phaeodactylum tricornutum
1.3e-70
268.9
456
36.2
sya00G10910
Synedra acus
1.3e-70
268.9
443
38.6
tps214270
Thalassiosira pseudonana
1.3e-70
268.9
430
37.2
gene15202
Fragilariopsis cylindrus
2.3e-70
268.1
434
38.2
sya00G200940
Synedra acus
3.9e-70
267.3
427
39.3
Naga_100011g15
Nannochloropsis gaditana
5.1e-70
266.9
454
37.2
fso197580
Fistulifera solaris
1.1e-69
265.8
448
35.9
Sro3091_g343560
Seminavis robusta
1.1e-69
265.8
472
35.0
ENSG00000139131
Homo sapiens
4.3e-69
263.8
409
37.7
fso68850
Fistulifera solaris
2.1e-68
261.5
428
36.4
CC00G23260
Cyclotella cryptica
6.6e-62
240.0
374
38.2
SPCC576.06c
Schizosaccharomyces pombe
1.6e-55
218.8
310
40.3
WBGene00006968
Caenorhabditis elegans
1.8e-54
215.3
454
31.9
pte521670
Paramecium tetraurelia
1.7e-41
172.2
337
33.5
emh385270
Emiliania huxleyi
2.0e-34
148.7
479
28.0
emh142860
Emiliania huxleyi
1.6e-23
112.5
274
31.0
CC00G165120
Cyclotella cryptica
1.1e-08
63.2
45
57.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing