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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G01500
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G01500
Arabidopsis thaliana
1.1e-182
640.6
348
100.0
AT5G14740
Arabidopsis thaliana
7.3e-129
461.8
259
86.1
AT1G70410
Arabidopsis thaliana
4.2e-84
313.2
254
60.6
AT1G23730
Arabidopsis thaliana
1.7e-80
301.2
254
57.1
Pp3c1_19190
Physcomitrella patens
1.7e-56
221.5
270
43.3
Pp3c24_9430
Physcomitrella patens
2.9e-53
210.7
202
50.0
Pp3c16_19250
Physcomitrella patens
8.5e-53
209.1
202
51.0
Pp3c2_15140
Physcomitrella patens
7.2e-52
206.1
207
48.3
Pp3c20_18640
Physcomitrella patens
2.0e-49
198.0
202
47.5
AT4G33580
Arabidopsis thaliana
2.7e-46
187.6
233
43.3
Pp3c7_14450
Physcomitrella patens
2.9e-45
184.1
199
45.7
AT1G58180
Arabidopsis thaliana
3.1e-39
164.1
253
35.6
pte710960
Paramecium tetraurelia
1.2e-22
109.0
207
30.9
pte657760
Paramecium tetraurelia
1.7e-21
105.1
182
30.8
pte305580
Paramecium tetraurelia
6.6e-21
103.2
188
31.4
pte709950
Paramecium tetraurelia
2.8e-19
97.8
182
30.2
pte42220
Paramecium tetraurelia
8.1e-19
96.3
194
28.9
pte556640
Paramecium tetraurelia
1.8e-18
95.1
97
43.3
pte262850
Paramecium tetraurelia
3.1e-18
94.4
99
43.4
Cre09.g405750
Chlamydomonas reinhardtii
6.4e-16
86.7
128
32.0
Ec-06_004120
Ectocarpus siliculosus
1.4e-15
85.5
201
29.9
SPBP8B7.05c
Schizosaccharomyces pombe
2.4e-15
84.7
174
31.6
Cre13.g607350
Chlamydomonas reinhardtii
4.6e-14
80.5
196
27.6
WBGene00000245
Caenorhabditis elegans
1.3e-13
79.0
223
27.8
Sro411_g137710
Seminavis robusta
6.6e-13
76.6
117
38.5
Cre12.g485050
Chlamydomonas reinhardtii
1.5e-12
75.5
165
30.9
ptri215880
Phaeodactylum tricornutum
2.5e-12
74.7
135
33.3
Sro241_g096440
Seminavis robusta
2.5e-12
74.7
175
32.0
Ec-22_001150
Ectocarpus siliculosus
4.3e-12
73.9
108
35.2
Sro241_g096430
Seminavis robusta
4.3e-12
73.9
175
31.4
ptri143790
Phaeodactylum tricornutum
3.6e-11
70.9
143
32.2
Sro1031_g233470
Seminavis robusta
1.4e-10
68.9
85
41.2
YNL036W
Saccharomyces cerevisiae strain S288C
5.8e-09
63.5
98
35.7
FBgn0037646
Drosophila melanogaster
3.8e-08
60.8
105
30.5
ccr140520
Chondrus crispus
3.2e-07
57.8
89
37.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (7 genes)
Seminavis robusta (4 genes)
Synedra acus (0 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing