Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G67500
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G67500
Arabidopsis thaliana
0.0e+00
3785.3
1917
100.0
Pp3c2_33440
Physcomitrella patens
0.0e+00
1082.0
1138
51.4
Cre09.g387400
Chlamydomonas reinhardtii
6.7e-224
780.0
863
48.4
ENSG00000009413
Homo sapiens
6.7e-200
700.3
891
43.3
FBgn0002891
Drosophila melanogaster
1.0e-195
686.4
2220
28.6
YPL167C
Saccharomyces cerevisiae strain S288C
4.5e-180
634.4
871
39.8
ccr21960
Chondrus crispus
8.3e-174
613.6
882
42.4
Ec-12_001530
Ectocarpus siliculosus
1.6e-172
609.4
930
39.4
CM18G01020
Cyanidioschyzon merolae
4.9e-158
561.2
2104
27.8
gsu92350
Galdieria sulphuraria
5.2e-152
541.2
895
36.3
SPAC688.10
Schizosaccharomyces pombe
1.7e-150
536.2
958
36.1
pte232000
Paramecium tetraurelia
6.6e-139
497.7
976
33.3
tps28070
Thalassiosira pseudonana
1.4e-128
463.4
766
37.5
ps00G16990
Pseudo-nitzschia multiseries
9.0e-120
434.1
811
35.4
gene530
Fragilariopsis cylindrus
2.1e-113
412.9
803
33.9
fso173980
Fistulifera solaris
3.7e-113
412.1
941
32.4
fso141100
Fistulifera solaris
6.2e-113
411.4
938
32.2
CC00G194270
Cyclotella cryptica
1.3e-110
403.7
959
32.3
WBGene00021344
Caenorhabditis elegans
2.9e-110
402.5
557
43.3
sya00G217340
Synedra acus
2.9e-110
402.5
965
31.6
ptri13370
Phaeodactylum tricornutum
3.2e-109
399.1
881
33.0
Sro443_g144000
Seminavis robusta
3.0e-107
392.5
867
32.5
gsu82940
Galdieria sulphuraria
6.5e-86
321.6
862
27.8
FBgn0263600
Drosophila melanogaster
1.2e-84
317.4
851
28.7
ccr136780
Chondrus crispus
3.9e-83
312.4
848
27.7
YDL102W
Saccharomyces cerevisiae strain S288C
1.7e-81
307.0
852
28.2
CM14G01990
Cyanidioschyzon merolae
4.8e-81
305.4
862
27.5
Pp3c27_3350
Physcomitrella patens
1.8e-80
303.5
847
27.6
SPBC336.04
Schizosaccharomyces pombe
1.8e-80
303.5
848
27.5
Sro278_g106640
Seminavis robusta
7.0e-80
301.6
862
27.8
emh350960
Emiliania huxleyi
1.2e-79
300.8
465
40.4
emh185860
Emiliania huxleyi
1.2e-79
300.8
465
40.4
Pp3c6_19160
Physcomitrella patens
1.6e-79
300.4
847
27.9
gene6212
Fragilariopsis cylindrus
4.5e-79
298.9
862
27.4
ENSG00000062822
Homo sapiens
5.9e-79
298.5
870
27.7
CC00G177910
Cyclotella cryptica
8.5e-78
294.7
859
27.2
AT5G63960
Arabidopsis thaliana
1.1e-77
294.3
857
28.4
ptri98820
Phaeodactylum tricornutum
1.9e-77
293.5
859
27.9
fso144230
Fistulifera solaris
3.2e-77
292.7
879
27.4
pte563840
Paramecium tetraurelia
6.1e-76
288.5
875
25.0
ps00G51020
Pseudo-nitzschia multiseries
1.0e-75
287.7
887
27.3
tps169130
Thalassiosira pseudonana
5.2e-75
285.4
855
26.9
AA0005G01720
Aureococcus anophagefferens
6.7e-75
285.0
846
27.1
WBGene00008645
Caenorhabditis elegans
8.8e-75
284.6
856
25.8
PSNMU-V1.4_AUG-EV-PASAV3_0048050
Pseudo-nitzschia multistriata
1.2e-74
284.3
887
27.4
sya00G178640
Synedra acus
1.8e-72
276.9
730
28.8
Naga_100229g7
Nannochloropsis gaditana
7.0e-72
275.0
723
30.3
Cre01.g015250
Chlamydomonas reinhardtii
2.2e-70
270.0
849
26.5
Ec-10_001440
Ectocarpus siliculosus
4.2e-69
265.8
685
30.7
fso59390
Fistulifera solaris
6.8e-67
258.5
899
25.6
tho175940
Thalassiosira oceanica
1.7e-65
253.8
820
29.1
gene17542
Fragilariopsis cylindrus
2.8e-57
226.5
534
30.7
Naga_100025g11
Nannochloropsis gaditana
1.9e-53
213.8
841
27.2
Pp3c17_18800
Physcomitrella patens
5.6e-53
212.2
708
26.7
emh151600
Emiliania huxleyi
8.6e-46
188.3
876
22.4
emh323040
Emiliania huxleyi
2.0e-42
177.2
874
21.9
tho135840
Thalassiosira oceanica
4.9e-41
172.6
352
33.5
Ec-06_005880
Ectocarpus siliculosus
3.5e-39
166.4
614
23.1
AA0002G05090
Aureococcus anophagefferens
5.8e-34
149.1
190
47.9
pte511280
Paramecium tetraurelia
2.9e-33
146.7
577
24.3
sya00G263590
Synedra acus
3.7e-33
146.4
668
23.1
tps230140
Thalassiosira pseudonana
1.1e-32
144.8
617
24.8
ENSG00000101868
Homo sapiens
7.1e-32
142.1
767
22.3
Pp3c16_6050
Physcomitrella patens
6.0e-31
139.0
557
24.4
PSNMU-V1.4_AUG-EV-PASAV3_0055930
Pseudo-nitzschia multistriata
7.8e-31
138.7
783
22.7
Pp3c25_2990
Physcomitrella patens
1.0e-30
138.3
548
24.1
gsu98870
Galdieria sulphuraria
3.9e-30
136.3
682
24.2
emh272570
Emiliania huxleyi
2.5e-29
133.7
689
23.5
gene15488
Fragilariopsis cylindrus
2.5e-29
133.7
607
23.2
ps00G116560
Pseudo-nitzschia multiseries
5.6e-29
132.5
611
23.7
ccr140240
Chondrus crispus
7.3e-29
132.1
424
26.7
fso83820
Fistulifera solaris
1.6e-28
131.0
661
22.2
Sro49_g028720
Seminavis robusta
1.6e-28
131.0
670
22.5
ptri241570
Phaeodactylum tricornutum
2.1e-28
130.6
661
23.1
fso88210
Fistulifera solaris
1.8e-27
127.5
605
22.6
AT5G67100
Arabidopsis thaliana
2.4e-27
127.1
708
23.3
emh350940
Emiliania huxleyi
8.9e-27
125.2
283
34.6
SPAC3H5.06c
Schizosaccharomyces pombe
1.5e-26
124.4
410
25.9
Pp3c1_21120
Physcomitrella patens
4.4e-26
122.9
697
22.2
FBgn0259113
Drosophila melanogaster
1.9e-24
117.5
575
24.2
tho346140
Thalassiosira oceanica
2.4e-24
117.1
267
30.7
tho331580
Thalassiosira oceanica
4.1e-24
116.3
369
28.5
Naga_102284g1
Nannochloropsis gaditana
5.4e-24
115.9
112
49.1
Cre04.g214350
Chlamydomonas reinhardtii
7.1e-24
115.5
547
25.0
tho229920
Thalassiosira oceanica
6.0e-23
112.5
821
22.3
CC00G204380
Cyclotella cryptica
1.3e-22
111.3
500
23.8
AA0021G01210
Aureococcus anophagefferens
3.0e-22
110.2
412
26.0
Pp3c1_290
Physcomitrella patens
3.9e-22
109.8
552
22.1
Cre03.g198750
Chlamydomonas reinhardtii
1.1e-21
108.2
452
24.8
AA0001G00210
Aureococcus anophagefferens
1.5e-21
107.8
294
30.3
Pp3c10_11570
Physcomitrella patens
4.3e-21
106.3
472
22.7
Pp3c13_14630
Physcomitrella patens
5.6e-21
105.9
457
23.4
AA0002G05100
Aureococcus anophagefferens
1.2e-20
104.8
107
51.4
CM09G01760
Cyanidioschyzon merolae
1.2e-20
104.8
354
28.0
WBGene00012936
Caenorhabditis elegans
2.1e-20
104.0
409
25.2
Pp3c13_14690
Physcomitrella patens
2.8e-20
103.6
431
24.6
Pp3c10_25280
Physcomitrella patens
3.1e-19
100.1
486
22.6
Pp3c6_15720
Physcomitrella patens
5.2e-19
99.4
539
21.2
pte412380
Paramecium tetraurelia
1.5e-18
97.8
613
21.0
YNL102W
Saccharomyces cerevisiae strain S288C
3.4e-18
96.7
690
22.3
Pp3c2_29370
Physcomitrella patens
4.4e-18
96.3
541
22.0
emh185840
Emiliania huxleyi
4.2e-16
89.7
106
51.9
tho135860
Thalassiosira oceanica
1.6e-15
87.8
307
23.1
Pp3c11_13900
Physcomitrella patens
1.0e-14
85.1
410
24.4
Pp3c9_12701
Physcomitrella patens
8.1e-12
75.5
348
22.4
Pp3c2_390
Physcomitrella patens
4.0e-11
73.2
542
19.9
gsu08620
Galdieria sulphuraria
2.6e-10
70.5
656
21.5
emh350900
Emiliania huxleyi
4.2e-08
63.2
63
38.1
emh185800
Emiliania huxleyi
4.2e-08
63.2
63
38.1
Naga_100342g1
Nannochloropsis gaditana
1.6e-07
61.2
85
41.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (3 genes)
Thalassiosira oceanica (6 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (4 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (5 genes)
Ectocarpus siliculosus (3 genes)
Nannochloropsis gaditana (4 genes)
Homo sapiens (3 genes)
Drosophila melanogaster (3 genes)
Caenorhabditis elegans (3 genes)
Saccharomyces cerevisiae strain S288C (3 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (3 genes)
Chondrus crispus (3 genes)
Galdieria sulphuraria (4 genes)
Emiliania huxleyi (9 genes)
Paramecium tetraurelia (4 genes)
Seminavis robusta (3 genes)
Synedra acus (3 genes)
Physcomitrella patens (17 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing