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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G51140
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G51140
Arabidopsis thaliana
5.6e-191
668.3
380
100.0
AT2G42280
Arabidopsis thaliana
1.8e-40
168.3
369
37.7
AT1G35460
Arabidopsis thaliana
1.4e-27
125.6
86
65.1
AT2G43140
Arabidopsis thaliana
1.1e-26
122.5
236
36.9
AT4G09180
Arabidopsis thaliana
3.3e-26
120.9
91
65.9
AT1G05805
Arabidopsis thaliana
1.3e-25
119.0
242
39.3
Pp3c9_3300
Physcomitrella patens
1.8e-24
115.2
127
49.6
Pp3c15_4770
Physcomitrella patens
4.1e-24
114.0
106
56.6
Pp3c15_4760
Physcomitrella patens
4.1e-24
114.0
106
56.6
Pp3c14_20740
Physcomitrella patens
2.6e-23
111.3
109
57.8
Pp3c18_6880
Physcomitrella patens
5.9e-23
110.2
156
46.8
Pp3c19_11400
Physcomitrella patens
1.1e-21
105.9
241
36.1
Pp3c4_3920
Physcomitrella patens
3.6e-20
100.9
95
63.2
Pp3c21_14114
Physcomitrella patens
7.5e-18
93.2
71
66.2
Pp3c21_14110
Physcomitrella patens
7.5e-18
93.2
71
66.2
Pp3c12_25990
Physcomitrella patens
2.2e-17
91.7
245
36.3
AT2G24260
Arabidopsis thaliana
2.3e-11
71.6
69
59.4
AT5G58010
Arabidopsis thaliana
5.2e-11
70.5
69
55.1
Pp3c17_17000
Physcomitrella patens
5.2e-11
70.5
69
56.5
Pp3c14_15890
Physcomitrella patens
5.2e-11
70.5
69
56.5
Pp3c10_16180
Physcomitrella patens
1.5e-10
68.9
105
41.9
AT4G34530
Arabidopsis thaliana
2.6e-10
68.2
64
57.8
AT1G03040
Arabidopsis thaliana
5.7e-10
67.0
95
44.2
AT4G02590
Arabidopsis thaliana
5.7e-10
67.0
73
53.4
AT1G68920
Arabidopsis thaliana
9.8e-10
66.2
64
56.2
AT5G50915
Arabidopsis thaliana
9.8e-10
66.2
64
57.8
Pp3c16_7710
Physcomitrella patens
9.8e-10
66.2
125
39.2
Pp3c17_23070
Physcomitrella patens
1.3e-09
65.9
64
56.2
Pp3c14_24040
Physcomitrella patens
1.3e-09
65.9
64
56.2
Pp3c6_9520
Physcomitrella patens
1.3e-09
65.9
81
49.4
Pp3c3_19160
Physcomitrella patens
1.7e-09
65.5
102
43.1
AT1G10120
Arabidopsis thaliana
2.2e-09
65.1
107
41.1
Pp3c2_2660
Physcomitrella patens
2.2e-09
65.1
105
41.9
AT4G30980
Arabidopsis thaliana
2.8e-09
64.7
64
57.8
Pp3c5_18850
Physcomitrella patens
2.8e-09
64.7
64
54.7
Pp3c27_400
Physcomitrella patens
3.7e-09
64.3
148
34.5
AT5G48560
Arabidopsis thaliana
4.8e-09
63.9
64
54.7
Pp3c2_620
Physcomitrella patens
4.8e-09
63.9
64
56.2
AT3G23690
Arabidopsis thaliana
1.1e-08
62.8
130
37.7
AT1G25330
Arabidopsis thaliana
1.4e-08
62.4
64
51.6
AT4G36540
Arabidopsis thaliana
1.4e-08
62.4
105
40.0
AT3G07340
Arabidopsis thaliana
2.4e-08
61.6
249
28.9
AT1G18400
Arabidopsis thaliana
5.4e-08
60.5
64
51.6
AT1G27740
Arabidopsis thaliana
5.4e-08
60.5
121
37.2
AT1G26260
Arabidopsis thaliana
7.0e-08
60.1
186
32.3
AT1G59640
Arabidopsis thaliana
7.0e-08
60.1
64
53.1
AT1G73830
Arabidopsis thaliana
7.0e-08
60.1
64
51.6
AT2G18300
Arabidopsis thaliana
7.0e-08
60.1
64
50.0
Pp3c16_19970
Physcomitrella patens
7.0e-08
60.1
66
51.5
Pp3c27_8050
Physcomitrella patens
9.1e-08
59.7
66
51.5
AT4G33880
Arabidopsis thaliana
1.6e-07
58.9
65
52.3
Pp3c14_24070
Physcomitrella patens
1.6e-07
58.9
64
50.0
AT2G42300
Arabidopsis thaliana
2.0e-07
58.5
72
47.2
AT5G62610
Arabidopsis thaliana
7.7e-07
56.6
64
48.4
Pp3c1_38880
Physcomitrella patens
1.3e-06
55.8
66
47.0
AT5G43175
Arabidopsis thaliana
1.7e-06
55.5
71
45.1
Pp3c2_8880
Physcomitrella patens
1.7e-06
55.5
66
47.0
AT3G21330
Arabidopsis thaliana
2.3e-06
55.1
63
50.8
Pp3c26_10830
Physcomitrella patens
2.3e-06
55.1
64
48.4
Pp3c20_590
Physcomitrella patens
2.3e-06
55.1
65
47.7
AT3G50330
Arabidopsis thaliana
3.8e-06
54.3
56
55.4
AT5G33210
Arabidopsis thaliana
3.8e-06
54.3
30
70.0
Pp3c4_24380
Physcomitrella patens
3.8e-06
54.3
66
48.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (33 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (30 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing