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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G49130
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G49130
Arabidopsis thaliana
1.2e-181
637.1
327
100.0
AT1G73870
Arabidopsis thaliana
1.4e-28
128.6
380
33.4
AT1G25440
Arabidopsis thaliana
6.4e-26
119.8
396
30.8
AT1G68520
Arabidopsis thaliana
4.1e-25
117.1
398
29.6
Pp3c7_23900
Physcomitrella patens
3.6e-13
77.4
466
25.1
Pp3c22_5440
Physcomitrella patens
5.8e-11
70.1
451
24.6
AT1G07050
Arabidopsis thaliana
1.7e-10
68.6
54
70.4
Pp3c12_21300
Physcomitrella patens
1.7e-10
68.6
44
77.3
Pp3c18_13350
Physcomitrella patens
4.9e-10
67.0
459
24.4
Pp3c2_35540
Physcomitrella patens
6.4e-10
66.6
455
24.0
Pp3c1_950
Physcomitrella patens
1.1e-09
65.9
457
21.9
Pp3c8_1870
Physcomitrella patens
1.1e-09
65.9
44
75.0
AT5G57180
Arabidopsis thaliana
1.4e-09
65.5
43
76.7
Pp3c19_2450
Physcomitrella patens
1.9e-09
65.1
44
72.7
AT5G14370
Arabidopsis thaliana
4.2e-09
63.9
50
64.0
Pp3c4_7080
Physcomitrella patens
4.2e-09
63.9
44
70.5
Pp3c3_35020
Physcomitrella patens
4.2e-09
63.9
472
24.2
AT2G24790
Arabidopsis thaliana
3.5e-08
60.8
296
26.0
AT5G24930
Arabidopsis thaliana
1.0e-07
59.3
46
67.4
AT4G25990
Arabidopsis thaliana
3.0e-07
57.8
58
58.6
AT5G57660
Arabidopsis thaliana
8.7e-07
56.2
333
24.6
AT5G15840
Arabidopsis thaliana
7.4e-06
53.1
46
60.9
ccr58180
Chondrus crispus
9.6e-06
52.8
52
48.1
Pp3c10_22950
Physcomitrella patens
9.6e-06
52.8
67
46.3
Pp3c2_31580
Physcomitrella patens
9.6e-06
52.8
45
60.0
Pp3c6_14410
Physcomitrella patens
9.6e-06
52.8
52
50.0
Pp3c7_25600
Physcomitrella patens
9.6e-06
52.8
44
50.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (12 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (14 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing