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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G17420
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G17420
Arabidopsis thaliana
0.0e+00
1859.3
920
100.0
AT1G72520
Arabidopsis thaliana
0.0e+00
1528.1
928
81.5
AT1G67560
Arabidopsis thaliana
6.9e-251
868.6
842
52.7
Pp3c12_14480
Physcomitrella patens
7.6e-242
838.6
937
46.4
AT3G45140
Arabidopsis thaliana
7.9e-215
748.8
865
44.5
Pp3c11_5120
Physcomitrella patens
5.0e-209
729.6
852
44.4
Pp3c1_29300
Physcomitrella patens
2.6e-205
717.2
855
43.5
AT1G55020
Arabidopsis thaliana
2.8e-204
713.8
847
44.0
Pp3c1_29700
Physcomitrella patens
3.1e-203
710.3
855
43.3
AT3G22400
Arabidopsis thaliana
4.2e-200
699.9
876
43.8
Pp3c15_13040
Physcomitrella patens
3.9e-198
693.3
827
44.0
Pp3c15_12980
Physcomitrella patens
1.5e-197
691.4
827
43.7
Pp3c15_13020
Physcomitrella patens
6.3e-196
686.0
864
42.8
Pp3c15_12990
Physcomitrella patens
6.3e-196
686.0
864
42.8
Pp3c7_26600
Physcomitrella patens
1.2e-194
681.8
752
45.7
Pp3c14_10640
Physcomitrella patens
9.4e-192
672.2
826
43.5
Pp3c17_16260
Physcomitrella patens
4.8e-188
659.8
885
41.5
Pp3c3_18720
Physcomitrella patens
1.3e-127
459.1
447
50.8
Pp3c4_10250
Physcomitrella patens
2.8e-111
404.8
529
43.5
Cre12.g512300
Chlamydomonas reinhardtii
8.0e-82
307.0
575
36.3
Pp3c3_18710
Physcomitrella patens
7.2e-59
230.7
305
40.0
ENSG00000179148
Homo sapiens
6.4e-47
191.0
465
29.0
ENSG00000179593
Homo sapiens
1.3e-44
183.3
518
29.2
ENSG00000012779
Homo sapiens
2.3e-44
182.6
516
28.5
ENSG00000275565
Homo sapiens
2.3e-44
182.6
516
28.5
ENSG00000179477
Homo sapiens
8.0e-42
174.1
468
29.1
ENSG00000108839
Homo sapiens
4.0e-41
171.8
516
28.1
ENSG00000161905
Homo sapiens
6.8e-41
171.0
515
28.2
Ec-03_000020
Ectocarpus siliculosus
1.1e-30
137.1
429
27.7
ccr28460
Chondrus crispus
3.5e-29
132.1
429
28.2
Ec-20_003620
Ectocarpus siliculosus
1.3e-28
130.2
509
25.5
Ec-03_000010
Ectocarpus siliculosus
2.1e-26
122.9
391
27.9
Ec-20_003630
Ectocarpus siliculosus
6.2e-26
121.3
444
25.5
ps00G183290
Pseudo-nitzschia multiseries
1.6e-18
96.7
317
26.8
Pp3c14_15340
Physcomitrella patens
4.5e-08
62.0
77
33.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (7 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (15 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing