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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G12480
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G12480
Arabidopsis thaliana
4.7e-311
1067.8
557
100.0
Pp3c1_33890
Physcomitrella patens
6.2e-138
492.7
390
63.1
Pp3c2_26550
Physcomitrella patens
4.0e-129
463.4
366
61.5
AT5G24030
Arabidopsis thaliana
3.7e-114
413.7
398
51.5
AT4G27970
Arabidopsis thaliana
1.1e-113
412.1
421
51.3
Pp3c9_17220
Physcomitrella patens
9.0e-113
409.1
416
50.7
Pp3c14_15640
Physcomitrella patens
3.3e-75
284.3
360
41.7
AT1G62280
Arabidopsis thaliana
1.8e-57
225.3
309
40.1
AT1G62262
Arabidopsis thaliana
5.0e-55
217.2
307
40.1
Ec-13_001400
Ectocarpus siliculosus
1.7e-26
122.5
235
35.3
Sro400_g135030
Seminavis robusta
2.0e-11
72.4
109
36.7
Pp3c4_2990
Physcomitrella patens
2.6e-11
72.0
69
53.6
ccr26780
Chondrus crispus
9.9e-11
70.1
298
22.5
Ec-03_004790
Ectocarpus siliculosus
1.3e-10
69.7
338
25.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (5 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (0 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
No editing