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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G12260
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G12260
Arabidopsis thaliana
3.9e-227
788.5
396
100.0
AT1G62700
Arabidopsis thaliana
4.9e-137
489.2
412
69.9
AT4G36160
Arabidopsis thaliana
2.6e-82
307.4
345
50.7
AT2G18060
Arabidopsis thaliana
5.8e-82
306.2
365
49.6
AT5G62380
Arabidopsis thaliana
5.7e-77
289.7
185
69.7
AT5G66300
Arabidopsis thaliana
5.3e-75
283.1
342
47.7
AT1G71930
Arabidopsis thaliana
3.4e-66
253.8
161
68.9
AT2G46770
Arabidopsis thaliana
3.6e-63
243.8
364
42.3
AT1G32770
Arabidopsis thaliana
6.1e-63
243.0
275
47.6
AT3G61910
Arabidopsis thaliana
1.0e-62
242.3
171
66.7
AT4G10350
Arabidopsis thaliana
1.0e-62
242.3
153
69.9
AT1G33280
Arabidopsis thaliana
1.4e-62
241.9
151
70.9
AT1G79580
Arabidopsis thaliana
2.4e-59
231.1
152
69.1
Pp3c13_6470
Physcomitrella patens
9.1e-59
229.2
162
67.3
Pp3c26_13950
Physcomitrella patens
2.6e-58
227.6
264
48.1
Pp3c4_20430
Physcomitrella patens
5.0e-57
223.4
157
65.6
Pp3c13_20650
Physcomitrella patens
8.5e-57
222.6
156
67.3
Pp3c12_15190
Physcomitrella patens
1.6e-55
218.4
199
55.3
Pp3c3_12890
Physcomitrella patens
2.7e-55
217.6
324
41.4
Pp3c3_2470
Physcomitrella patens
3.9e-54
213.8
309
42.1
Pp3c6_1310
Physcomitrella patens
6.3e-52
206.5
275
45.1
Pp3c3_25610
Physcomitrella patens
4.5e-50
200.3
176
56.8
Pp3c4_11490
Physcomitrella patens
1.7e-49
198.4
162
57.4
AT3G18400
Arabidopsis thaliana
1.5e-48
195.3
304
41.4
Pp3c27_7560
Physcomitrella patens
3.2e-48
194.1
180
51.7
Pp3c12_18020
Physcomitrella patens
4.2e-48
193.7
156
57.7
AT5G61430
Arabidopsis thaliana
7.2e-48
193.0
154
57.8
Pp3c16_19830
Physcomitrella patens
7.2e-48
193.0
193
50.8
AT5G07680
Arabidopsis thaliana
1.2e-47
192.2
177
52.0
AT5G39610
Arabidopsis thaliana
1.2e-47
192.2
155
58.7
AT1G69490
Arabidopsis thaliana
1.6e-47
191.8
201
44.8
Pp3c26_4660
Physcomitrella patens
1.6e-47
191.8
158
58.2
AT1G54330
Arabidopsis thaliana
2.1e-47
191.4
157
53.5
AT3G17730
Arabidopsis thaliana
2.1e-47
191.4
152
53.9
AT1G65910
Arabidopsis thaliana
2.7e-47
191.0
156
53.2
AT2G24430
Arabidopsis thaliana
2.7e-47
191.0
153
57.5
Pp3c5_570
Physcomitrella patens
2.7e-47
191.0
193
48.2
AT3G03200
Arabidopsis thaliana
1.0e-46
189.1
197
45.2
AT5G17260
Arabidopsis thaliana
2.3e-46
188.0
153
52.9
AT1G76420
Arabidopsis thaliana
1.5e-45
185.3
153
55.6
Pp3c6_27690
Physcomitrella patens
1.5e-45
185.3
160
54.4
AT3G29035
Arabidopsis thaliana
2.0e-45
184.9
155
56.8
AT3G15170
Arabidopsis thaliana
4.4e-45
183.7
188
49.5
AT5G04410
Arabidopsis thaliana
1.7e-44
181.8
188
44.7
AT5G53950
Arabidopsis thaliana
3.7e-44
180.6
161
53.4
Pp3c5_740
Physcomitrella patens
3.7e-44
180.6
174
48.9
Pp3c8_6080
Physcomitrella patens
3.7e-44
180.6
152
55.3
AT5G46590
Arabidopsis thaliana
4.8e-44
180.3
156
55.1
AT3G10490
Arabidopsis thaliana
1.1e-43
179.1
151
53.6
Pp3c6_28230
Physcomitrella patens
1.4e-43
178.7
172
48.3
AT3G12977
Arabidopsis thaliana
1.8e-43
178.3
156
53.8
AT5G18270
Arabidopsis thaliana
1.8e-43
178.3
155
54.2
Pp3c27_7510
Physcomitrella patens
1.8e-43
178.3
203
45.3
AT3G15500
Arabidopsis thaliana
3.1e-43
177.6
216
42.1
AT3G04060
Arabidopsis thaliana
5.3e-43
176.8
155
54.2
Pp3c24_8270
Physcomitrella patens
2.0e-42
174.9
152
53.3
Pp3c13_10800
Physcomitrella patens
2.7e-42
174.5
175
50.3
AT3G10500
Arabidopsis thaliana
3.5e-42
174.1
157
49.7
Pp3c16_13150
Physcomitrella patens
3.5e-42
174.1
174
47.7
Pp3c3_8880
Physcomitrella patens
4.5e-42
173.7
175
50.3
AT1G56010
Arabidopsis thaliana
5.9e-42
173.3
162
49.4
AT3G15510
Arabidopsis thaliana
7.7e-42
172.9
178
46.6
AT5G63790
Arabidopsis thaliana
7.7e-42
172.9
164
48.8
AT4G35580
Arabidopsis thaliana
1.3e-41
172.2
156
50.6
AT1G33060
Arabidopsis thaliana
1.7e-41
171.8
156
51.3
AT1G61110
Arabidopsis thaliana
1.7e-41
171.8
166
48.8
AT1G52890
Arabidopsis thaliana
2.2e-41
171.4
162
48.1
AT2G43000
Arabidopsis thaliana
2.2e-41
171.4
151
51.0
AT3G10480
Arabidopsis thaliana
2.9e-41
171.0
190
46.3
AT3G04070
Arabidopsis thaliana
6.5e-41
169.9
187
44.9
AT5G39820
Arabidopsis thaliana
8.5e-41
169.5
193
43.5
AT4G17980
Arabidopsis thaliana
1.5e-40
168.7
158
51.9
AT5G08790
Arabidopsis thaliana
1.5e-40
168.7
164
48.8
AT4G28530
Arabidopsis thaliana
3.2e-40
167.5
170
49.4
Pp3c23_9520
Physcomitrella patens
5.5e-40
166.8
152
48.0
AT1G26870
Arabidopsis thaliana
7.2e-40
166.4
161
47.2
AT1G34190
Arabidopsis thaliana
1.2e-39
165.6
176
43.8
AT1G52880
Arabidopsis thaliana
1.6e-39
165.2
165
47.9
AT4G27410
Arabidopsis thaliana
1.6e-39
165.2
173
45.7
AT2G33480
Arabidopsis thaliana
2.1e-39
164.9
153
49.7
Pp3c5_630
Physcomitrella patens
4.7e-39
163.7
177
46.3
AT1G32510
Arabidopsis thaliana
1.4e-38
162.2
162
46.9
AT2G02450
Arabidopsis thaliana
1.8e-38
161.8
151
49.0
AT5G64060
Arabidopsis thaliana
1.5e-37
158.7
187
39.0
AT5G13180
Arabidopsis thaliana
2.0e-37
158.3
158
47.5
AT5G24590
Arabidopsis thaliana
2.0e-37
158.3
158
50.0
AT3G49530
Arabidopsis thaliana
4.4e-37
157.1
157
47.8
AT5G09330
Arabidopsis thaliana
4.4e-37
157.1
180
40.0
AT1G01720
Arabidopsis thaliana
1.3e-36
155.6
163
45.4
Pp3c16_23260
Physcomitrella patens
1.7e-36
155.2
209
37.8
AT1G77450
Arabidopsis thaliana
2.8e-36
154.5
166
44.0
AT1G34180
Arabidopsis thaliana
3.7e-36
154.1
186
38.2
AT2G27300
Arabidopsis thaliana
1.4e-35
152.1
161
41.6
AT1G32870
Arabidopsis thaliana
2.4e-35
151.4
152
44.1
AT5G22290
Arabidopsis thaliana
7.0e-35
149.8
168
42.3
Pp3c20_18130
Physcomitrella patens
2.0e-34
148.3
150
48.7
AT2G17040
Arabidopsis thaliana
2.7e-34
147.9
151
45.0
AT3G12910
Arabidopsis thaliana
3.5e-34
147.5
178
43.8
AT5G04400
Arabidopsis thaliana
1.3e-33
145.6
151
47.7
AT3G44290
Arabidopsis thaliana
2.3e-30
134.8
125
44.0
Pp3c2_32530
Physcomitrella patens
3.7e-28
127.5
90
66.7
Pp3c7_6590
Physcomitrella patens
2.9e-25
117.9
96
59.4
AT4G01550
Arabidopsis thaliana
2.3e-22
108.2
169
37.3
AT4G01520
Arabidopsis thaliana
1.2e-21
105.9
170
35.9
AT3G04420
Arabidopsis thaliana
3.4e-21
104.4
151
37.7
AT4G01540
Arabidopsis thaliana
4.4e-21
104.0
168
36.3
AT3G44350
Arabidopsis thaliana
9.8e-21
102.8
194
33.0
AT1G02230
Arabidopsis thaliana
2.2e-20
101.7
131
43.5
AT5G64530
Arabidopsis thaliana
2.9e-20
101.3
169
34.9
AT1G02250
Arabidopsis thaliana
4.9e-20
100.5
131
43.5
AT5G22380
Arabidopsis thaliana
1.1e-19
99.4
130
38.5
AT1G02220
Arabidopsis thaliana
2.7e-18
94.7
128
40.6
Pp3c4_29470
Physcomitrella patens
6.6e-17
90.1
105
46.7
AT1G01010
Arabidopsis thaliana
3.3e-16
87.8
155
32.9
AT3G56530
Arabidopsis thaliana
3.3e-16
87.8
149
27.5
AT5G50820
Arabidopsis thaliana
1.4e-14
82.4
138
35.5
AT5G14000
Arabidopsis thaliana
1.9e-11
72.0
158
28.5
Pp3c22_130
Physcomitrella patens
1.9e-11
72.0
217
27.2
Pp3c27_7430
Physcomitrella patens
2.4e-11
71.6
75
40.0
AT3G55210
Arabidopsis thaliana
7.0e-11
70.1
161
24.8
AT1G28470
Arabidopsis thaliana
8.6e-09
63.2
184
26.6
AT4G28500
Arabidopsis thaliana
1.5e-08
62.4
166
29.5
AT4G29230
Arabidopsis thaliana
7.3e-08
60.1
171
28.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (90 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (33 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing