InterPro domain page  


InterPro id
IPR016159
Description
Cullin repeat-like-containing domain
Number of genes
82

InterPro distribution

aan
Aureococcus anophagefferens(5 genes)
ath
Arabidopsis thaliana(10 genes)
bprrcc1105
Bathycoccus prasinos(3 genes)
cme
Cyanidioschyzon merolae(3 genes)
cnc64a
Chlorella sp NC64A(3 genes)
cre
Chlamydomonas reinhardtii(3 genes)
cvu
Coccomyxa sp. C169(3 genes)
esi
Ectocarpus siliculosus(6 genes)
fcy
Fragilariopsis cylindrus(2 genes)
mpu
Micromonas pusilla strain CCMP1545(3 genes)
mrcc299
Micromonas sp RCC299(3 genes)
olu
Ostreococcus lucimarinus(3 genes)
orcc809
Ostreococcus sp RCC809(3 genes)
osa
Oryza sativa(12 genes)
ota
Ostreococcus tauri(3 genes)
ppa
Physcomitrella patens(7 genes)
ptri
Phaeodactylum tricornutum(4 genes)
tps
Thalassiosira pseudonana(3 genes)
vca
Volvox carteri(3 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 82 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AA0001G03210 aan name=estExt_Genewise1Plus.C_10546;protein_id=52007;transcript_id=52007;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) + scaffold_1 coding
AA0022G01040 aan name=estExt_fgenesh2_pm.C_220019;protein_id=70316;transcript_id=70316;transcript=eq;prot=eq;;fatm=CBR-CUL-3 protein - scaffold_22 coding
AA0033G00170 aan name=estExt_Genewise1Plus.C_330055;protein_id=55161;transcript_id=55161;transcript=eq;prot=eq;;fatm=CBR-CUL-3 protein + scaffold_33 coding
AA0038G00380 aan name=estExt_Genewise1Plus.C_380055;protein_id=55274;transcript_id=55274;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) + scaffold_38 coding
AA0078G00080 aan name=estExt_fgenesh2_pg.C_780007;protein_id=72785;transcript_id=72785;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) - scaffold_78 coding
AT1G02980 ath encodes an Arabidopsis cullin;cullin 2 transcript=eq;prot=eq; + 1 coding
AT1G26830 ath Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;cullin 3 transcript=eq;prot=eq; + 1 coding
AT1G43140 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, cullin-RING ubiquitin ligase complex; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2163 Blast hits to 2131 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 935; Fungi - 457; Plants - 383; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 coding
AT1G59790 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 1 (TAIR:AT4G02570.4); Has 1509 Blast hits to 1507 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 308; Plants - 286; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 coding
AT1G59800 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G59790.1); Has 1434 Blast hits to 1434 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 729; Fungi - 306; Plants - 271; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 coding
AT1G69670 ath cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;cullin 3B transcript=eq;prot=eq; - 1 coding
AT3G46910 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 524 Blast hits to 524 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 63; Plants - 121; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 3 coding
AT4G02570 ath Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;cullin 1 transcript=eq;prot=eq; + 4 coding
AT4G12100 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1267 Blast hits to 1267 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 268; Plants - 230; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; - 4 coding
AT5G46210 ath Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;cullin4 transcript=eq;prot=eq; - 5 coding
BPRRCC1105_09G02930 bprrcc1105 pid=Bathy09g02930;fatm=CBR-CUL-3 protein - chrom_09 coding
BPRRCC1105_17G00280 bprrcc1105 pid=Bathy17g00280;fatm=cullin-like protein1 (ISS) + chrom_17 coding
BPRRCC1105_18G01020 bprrcc1105 pid=Bathy18g01020;fatm=similar to cullin 4A (predicted), isoform CRA - chrom_18 coding
CM13G02910 cme E3 ubiquitin ligase SCF complex Cullin subunit pid=CMM291C; - c13f0002 coding
CM14G01130 cme cullin 4 pid=CMN113C; - c14f0005 coding
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