InterPro domain page  


InterPro id
IPR003903
Description
Ubiquitin interacting motif
Number of genes
127

InterPro distribution

aan
Aureococcus anophagefferens(7 genes)
ath
Arabidopsis thaliana(14 genes)
bprrcc1105
Bathycoccus prasinos(1 genes)
cme
Cyanidioschyzon merolae(3 genes)
cnc64a
Chlorella sp NC64A(10 genes)
cre
Chlamydomonas reinhardtii(9 genes)
cvu
Coccomyxa sp. C169(3 genes)
esi
Ectocarpus siliculosus(7 genes)
fcy
Fragilariopsis cylindrus(8 genes)
mpu
Micromonas pusilla strain CCMP1545(5 genes)
mrcc299
Micromonas sp RCC299(6 genes)
olu
Ostreococcus lucimarinus(5 genes)
orcc809
Ostreococcus sp RCC809(1 genes)
osa
Oryza sativa(12 genes)
ota
Ostreococcus tauri(4 genes)
ppa
Physcomitrella patens(6 genes)
ptri
Phaeodactylum tricornutum(11 genes)
tps
Thalassiosira pseudonana(8 genes)
vca
Volvox carteri(7 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 127 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AA0002G01790 aan name=fgenesh2_pg.C_scaffold_2000132;protein_id=61124;transcript_id=61124;transcript=eq;prot=eq; + scaffold_2 coding
AA0004G02880 aan name=fgenesh2_pg.C_scaffold_4000229;protein_id=62179;transcript_id=62179;transcript=eq;prot=eq; + scaffold_4 coding
AA0005G01390 aan name=estExt_fgenesh2_pg.C_50104;protein_id=71125;transcript_id=71125;transcript=eq;prot=eq; - scaffold_5 coding
AA0009G00710 aan name=fgenesh2_pg.C_scaffold_9000058;protein_id=64132;transcript_id=64132;transcript=eq;prot=eq; - scaffold_9 coding
AA0010G03100 aan name=fgenesh2_pg.C_scaffold_10000248;protein_id=64577;transcript_id=64577;transcript=eq;prot=eq;;fatm=Biopterin transport-related protein BT1 - scaffold_10 coding
AA0023G00270 aan name=fgenesh2_pg.C_scaffold_23000025;protein_id=66459;transcript_id=66459;transcript=eq;prot=eq;;fatm=Phosphatidylinositol/phosphatidylcholine transfer protein - scaffold_23 coding
AA0028G00320 aan name=fgenesh2_pg.C_scaffold_28000027;protein_id=66855;transcript_id=66855;transcript=eq;prot=eq;;fatm=major facilitator superfamily + scaffold_28 coding
AT1G14570 ath UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;UBX domain-containing protein transcript=eq;prot=eq; + 1 coding
AT1G18760 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13228.1); Has 8667 Blast hits to 8640 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2366; Fungi - 656; Plants - 4333; Viruses - 89; Other Eukaryotes - 1223 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; - 1 coding
AT1G19270 ath DA1 (DA1); CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 3009; Fungi - 63; Plants - 177; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).;DA1 transcript=eq;prot=eq; + 1 coding
AT1G43690 ath ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).;ubiquitin interaction motif-containing protein transcript=eq;prot=eq; + 1 coding
AT1G55860 ath encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.;ubiquitin-protein ligase 1 transcript=eq;prot=eq; - 1 coding
AT1G70320 ath encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.;ubiquitin-protein ligase 2 transcript=eq;prot=eq; - 1 coding
AT1G73440 ath calmodulin-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G00140.1); Has 2048 Blast hits to 2029 proteins in 336 species: Archae - 0; Bacteria - 7; Metazoa - 605; Fungi - 146; Plants - 781; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink).;calmodulin-related transcript=eq;prot=eq; + 1 coding
AT1G73660 ath Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.;protein tyrosine kinase family protein transcript=eq;prot=eq; - 1 coding
AT4G00752 ath UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G11740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;UBX domain-containing protein transcript=eq;prot=eq; - 4 coding
AT4G11860 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF544) transcript=eq;prot=eq; - 4 coding
AT4G11740 ath Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein.;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 4 coding
AT4G36860 ath LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1 (TAIR:AT1G19270.1); Has 6004 Blast hits to 4271 proteins in 323 species: Archae - 7; Bacteria - 228; Metazoa - 4096; Fungi - 190; Plants - 320; Viruses - 67; Other Eukaryotes - 1096 (source: NCBI BLink).;LIM domain-containing protein transcript=eq;prot=eq; - 4 coding
AT4G38630 ath Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities;regulatory particle non-ATPase 10 transcript=eq;prot=eq; - 4 coding
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