Gene Overview  


General information


Gene id
AT5G59550
Species
Arabidopsis thaliana
Transcript
AT5G59550.1
Coordinates
23998422 - 23999645
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000141   109 genes in 15 species
Sub family
ORTHO017700   3 genes in 2 species
Duplication type
Block duplicate
Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;zinc finger (C3HC4-type RING finger) family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0005488bindingC_Hunter31332500.000011499
InterPro domain(s)
Interpro idDescription
IPR010543 Protein of unknown function DUF1117
IPR018957 Zinc finger, C3HC4 RING-type
IPR001841 Zinc finger, RING-type
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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