Sub-family  

Parent family
HOM000019
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (3 genes)
osa
Oryza sativa (2 genes)
ppa
Physcomitrella patens (2 genes)



The gene family ORTHO007628 has 7 genes in 3 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 7 records out of 7 total, starting on record 1, ending on 7

gene_id species description comment strand chr outlier
AT1G12760 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; + 1 No
AT1G63170 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0; Bacteria - 6; Metazoa - 2543; Fungi - 730; Plants - 5047; Viruses - 25; Other Eukaryotes - 1196 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; + 1 No
AT4G11680 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; - 4 No
OS02G45240 osa zinc finger family protein, putative, expressed transcript=eq;prot=eq; - 2 No
OS04G48050 osa RING zinc finger protein, putative, expressed transcript=eq;prot=eq; - 4 No
PP00013G01200 ppa NULL name=gw1.13.133.1,pid=23876,prot=eq,tid=23876 - scaffold_13 No
PP00399G00100 ppa NULL name=estExt_Genewise1.C_3990013,pid=227141,prot=eq,tid=227141 - scaffold_399 No
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