Sub-family  

Parent family
HOM000141
 
Keywords


Overview of gene family content




aan
Aureococcus anophagefferens (1 gene)
ath
Arabidopsis thaliana (4 genes)
cvu
Coccomyxa sp. C169 (1 gene)
mrcc299
Micromonas sp RCC299 (1 gene)
osa
Oryza sativa (2 genes)



The gene family ORTHO005962 has 9 genes in 5 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 9 records out of 9 total, starting on record 1, ending on 9

gene_id species description comment strand chr outlier
AA0006G05410 aan name=gw1.6.984.1;protein_id=17903;transcript_id=17903;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein + scaffold_6 No
AT1G55530 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT3G13430 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 9891 Blast hits to 9858 proteins in 281 species: Archae - 0; Bacteria - 11; Metazoa - 2611; Fungi - 953; Plants - 4922; Viruses - 39; Other Eukaryotes - 1355 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT4G26400 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 4 No
AT5G56340 ath ATCRT1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 5 No
CV02G04930 cvu name=GG.C169_S02_00468;pid=58179;prot=eq;tid=58179;transcript=eq;fatm=RING/U-box domain-containing protein + scaffold_2 No
MRCC299_11G00860 mrcc299 name=EuGene.1100010088;pid=62302;prot=eq;tid=62302;transcript=eq;fatm=RING finger protein 126 - Chr_11 No
OS03G59760 osa RING finger protein 126, putative, expressed transcript=eq;prot=eq; + 3 No
OS05G40980 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; - 5 No
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